Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment

por Daniels, Noah M, Nadimpalli, Shilpa, Cowen, Lenore J
Publicado 2012

GLIDE: combining local methods and diffusion state embeddings to predict missing interactions in biological networks

por Devkota, Kapil, Murphy, James M, Cowen, Lenore J
Publicado 2020

Fault Tolerance in Protein Interaction Networks: Stable Bipartite Subgraphs and Redundant Pathways

por Brady, Arthur, Maxwell, Kyle, Daniels, Noah, Cowen, Lenore J.
Publicado 2009

SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone

por Daniels, Noah M., Hosur, Raghavendra, Berger, Bonnie, Cowen, Lenore J.
Publicado 2012

Detangling PPI networks to uncover functionally meaningful clusters

por Hall-Swan, Sarah, Crawford, Jake, Newman, Rebecca, Cowen, Lenore J.
Publicado 2018

Retraction Note: detangling PPI networks to uncover functionally meaningful clusters

por Hall-Swan, Sarah, Crawford, Jake, Newman, Rebecca, Cowen, Lenore J.
Publicado 2018

BETASCAN: Probable β-amyloids Identified by Pairwise Probabilistic Analysis

por Bryan, Allen W., Menke, Matthew, Cowen, Lenore J., Lindquist, Susan L., Berger, Bonnie
Publicado 2009

Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data

por Gallant, Andrew, Leiserson, Mark DM, Kachalov, Maxim, Cowen, Lenore J, Hescott, Benjamin J
Publicado 2013

MUNDO: protein function prediction embedded in a multispecies world

por Arsenescu, Victor, Devkota, Kapil, Erden, Mert, Shpilker, Polina, Werenski, Matthew, Cowen, Lenore J
Publicado 2021

Compressive genomics for protein databases

por Daniels, Noah M., Gallant, Andrew, Peng, Jian, Cowen, Lenore J., Baym, Michael, Berger, Bonnie
Publicado 2013

STITCHER: Dynamic assembly of likely amyloid and prion β-structures from secondary structure predictions

por Bryan, Allen W, O’Donnell, Charles W, Menke, Matthew, Cowen, Lenore J, Lindquist, Susan, Berger, Bonnie
Publicado 2012

GLIDER: function prediction from GLIDE-based neighborhoods

por Devkota, Kapil, Schmidt, Henri, Werenski, Matt, Murphy, James M, Erden, Mert, Arsenescu, Victor, Cowen, Lenore J
Publicado 2022

Going the Distance for Protein Function Prediction: A New Distance Metric for Protein Interaction Networks

por Cao, Mengfei, Zhang, Hao, Park, Jisoo, Daniels, Noah M., Crovella, Mark E., Cowen, Lenore J., Hescott, Benjamin
Publicado 2013

Correction: Going the Distance for Protein Function Prediction: A New Distance Metric for Protein Interaction Networks

por Cao, Mengfei, Zhang, Hao, Park, Jisoo, Daniels, Noah M., Crovella, Mark E., Cowen, Lenore J., Hescott, Benjamin
Publicado 2013

New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence

por Cao, Mengfei, Pietras, Christopher M., Feng, Xian, Doroschak, Kathryn J., Schaffner, Thomas, Park, Jisoo, Zhang, Hao, Cowen, Lenore J., Hescott, Benjamin J.
Publicado 2014

Assessment of network module identification across complex diseases

por Choobdar, Sarvenaz, Ahsen, Mehmet E., Crawford, Jake, Tomasoni, Mattia, Fang, Tao, Lamparter, David, Lin, Junyuan, Hescott, Benjamin, Hu, Xiaozhe, Mercer, Johnathan, Natoli, Ted, Narayan, Rajiv, Subramanian, Aravind, Zhang, Jitao D., Stolovitzky, Gustavo, Kutalik, Zoltán, Lage, Kasper, Slonim, Donna K., Saez-Rodriguez, Julio, Cowen, Lenore J., Bergmann, Sven, Marbach, Daniel
Publicado 2019