A Network Module for the Perseus Software for Computational Proteomics Facilitates Proteome Interaction Graph Analysis

por Rudolph, Jan Daniel, Cox, Jürgen
Publicado 2019

Software Lock Mass by Two-Dimensional Minimization of Peptide Mass Errors

por Cox, Jürgen, Michalski, Annette, Mann, Matthias
Publicado 2011

In-Vivo Quantitative Proteomics Reveals a Key Contribution of Post-Transcriptional Mechanisms to the Circadian Regulation of Liver Metabolism

por Robles, Maria S., Cox, Jürgen, Mann, Matthias
Publicado 2014

Isobaric Matching between Runs and Novel PSM-Level Normalization in MaxQuant Strongly Improve Reporter Ion-Based Quantification

por Yu, Sung-Huan, Kyriakidou, Pelagia, Cox, Jürgen
Publicado 2020

Expert System for Computer-assisted Annotation of MS/MS Spectra

por Neuhauser, Nadin, Michalski, Annette, Cox, Jürgen, Mann, Matthias
Publicado 2012

Homology-driven assembly of NOn-redundant protEin sequence sets (NOmESS) for mass spectrometry

por Temu, Tikira, Mann, Matthias, Räschle, Markus, Cox, Jürgen
Publicado 2016

Accurate and Automated High-Coverage Identification of Chemically Cross-Linked Peptides with MaxLynx

por Yılmaz, Şule, Busch, Florian, Nagaraj, Nagarjuna, Cox, Jürgen
Publicado 2022

Perseus plugin “Metis” for metabolic-pathway-centered quantitative multi-omics data analysis for static and time-series experimental designs

por Hamzeiy, Hamid, Ferretti, Daniela, Robles, Maria S., Cox, Jürgen
Publicado 2022

Quantitative Cross-linking/Mass Spectrometry Using Isotope-labeled Cross-linkers and MaxQuant

por Chen, Zhuo A., Fischer, Lutz, Cox, Jürgen, Rappsilber, Juri
Publicado 2016

Tracing back variations in archaeal ESCRT-based cell division to protein domain architectures

por Frohn, Béla P., Härtel, Tobias, Cox, Jürgen, Schwille, Petra
Publicado 2022

Predicting post-translational lysine acetylation using support vector machines

por Gnad, Florian, Ren, Shubin, Choudhary, Chunaram, Cox, Jürgen, Mann, Matthias
Publicado 2010

Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins

por Tyanova, Stefka, Cox, Jürgen, Olsen, Jesper, Mann, Matthias, Frishman, Dmitrij
Publicado 2013

A “Proteomic Ruler” for Protein Copy Number and Concentration Estimation without Spike-in Standards

por Wiśniewski, Jacek R., Hein, Marco Y., Cox, Jürgen, Mann, Matthias
Publicado 2014

Global, quantitative and dynamic mapping of protein subcellular localization

por Itzhak, Daniel N, Tyanova, Stefka, Cox, Jürgen, Borner, Georg HH
Publicado 2016

Securin Is Not Required for Chromosomal Stability in Human Cells

por Pfleghaar, Katrin, Heubes, Simone, Cox, Jürgen, Stemmann, Olaf, Speicher, Michael R
Publicado 2005

A Framework for Intelligent Data Acquisition and Real-Time Database Searching for Shotgun Proteomics

por Graumann, Johannes, Scheltema, Richard A., Zhang, Yong, Cox, Jürgen, Mann, Matthias
Publicado 2012

Global analysis of genome, transcriptome and proteome reveals the response to aneuploidy in human cells

por Stingele, Silvia, Stoehr, Gabriele, Peplowska, Karolina, Cox, Jürgen, Mann, Matthias, Storchova, Zuzana
Publicado 2012

Deep Proteomics of Mouse Skeletal Muscle Enables Quantitation of Protein Isoforms, Metabolic Pathways, and Transcription Factors

por Deshmukh, Atul S., Murgia, Marta, Nagaraj, Nagarjuna, Treebak, Jonas T., Cox, Jürgen, Mann, Matthias
Publicado 2015

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

por Cox, Jürgen, Hein, Marco Y., Luber, Christian A., Paron, Igor, Nagaraj, Nagarjuna, Mann, Matthias
Publicado 2014

MaxQuant.Live Enables Global Targeting of More Than 25,000 Peptides

por Wichmann, Christoph, Meier, Florian, Virreira Winter, Sebastian, Brunner, Andreas-David, Cox, Jürgen, Mann, Matthias
Publicado 2019