1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data

por Cox, Juergen, Mann, Matthias
Publicado 2012

Proteomic Changes Resulting from Gene Copy Number Variations in Cancer Cells

por Geiger, Tamar, Cox, Juergen, Mann, Matthias
Publicado 2010

Proteomics on an Orbitrap Benchtop Mass Spectrometer Using All-ion Fragmentation

por Geiger, Tamar, Cox, Juergen, Mann, Matthias
Publicado 2010

Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins

por Geiger, Tamar, Wehner, Anja, Schaab, Christoph, Cox, Juergen, Mann, Matthias
Publicado 2012

Analysis of High Accuracy, Quantitative Proteomics Data in the MaxQB Database

por Schaab, Christoph, Geiger, Tamar, Stoehr, Gabriele, Cox, Juergen, Mann, Matthias
Publicado 2012

Proteomic maps of breast cancer subtypes

por Tyanova, Stefka, Albrechtsen, Reidar, Kronqvist, Pauliina, Cox, Juergen, Mann, Matthias, Geiger, Tamar
Publicado 2016

Visualization of LC‐MS/MS proteomics data in MaxQuant

por Tyanova, Stefka, Temu, Tikira, Carlson, Arthur, Sinitcyn, Pavel, Mann, Matthias, Cox, Juergen
Publicado 2015

Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation

por Thakur, Suman S., Geiger, Tamar, Chatterjee, Bhaswati, Bandilla, Peter, Fröhlich, Florian, Cox, Juergen, Mann, Matthias
Publicado 2011

Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles

por Deeb, Sally J., Tyanova, Stefka, Hummel, Michael, Schmidt-Supprian, Marc, Cox, Juergen, Mann, Matthias
Publicado 2015

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

por Gnad, Florian, Ren, Shubin, Cox, Juergen, Olsen, Jesper V, Macek, Boris, Oroshi, Mario, Mann, Matthias
Publicado 2007

Deep proteome and transcriptome mapping of a human cancer cell line

por Nagaraj, Nagarjuna, Wisniewski, Jacek R, Geiger, Tamar, Cox, Juergen, Kircher, Martin, Kelso, Janet, Pääbo, Svante, Mann, Matthias
Publicado 2011

System-wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-shot Ultra HPLC Runs on a Bench Top Orbitrap

por Nagaraj, Nagarjuna, Alexander Kulak, Nils, Cox, Juergen, Neuhauser, Nadin, Mayr, Korbinian, Hoerning, Ole, Vorm, Ole, Mann, Matthias
Publicado 2012

Initial Quantitative Proteomic Map of 28 Mouse Tissues Using the SILAC Mouse

por Geiger, Tamar, Velic, Ana, Macek, Boris, Lundberg, Emma, Kampf, Caroline, Nagaraj, Nagarjuna, Uhlen, Mathias, Cox, Juergen, Mann, Matthias
Publicado 2013

Defining the transcriptome and proteome in three functionally different human cell lines

por Lundberg, Emma, Fagerberg, Linn, Klevebring, Daniel, Matic, Ivan, Geiger, Tamar, Cox, Juergen, Älgenäs, Cajsa, Lundeberg, Joakim, Mann, Matthias, Uhlen, Mathias
Publicado 2010

Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome

por Grassl, Niklas, Kulak, Nils Alexander, Pichler, Garwin, Geyer, Philipp Emanuel, Jung, Jette, Schubert, Sören, Sinitcyn, Pavel, Cox, Juergen, Mann, Matthias
Publicado 2016

Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer

por Michalski, Annette, Damoc, Eugen, Hauschild, Jan-Peter, Lange, Oliver, Wieghaus, Andreas, Makarov, Alexander, Nagaraj, Nagarjuna, Cox, Juergen, Mann, Matthias, Horning, Stevan
Publicado 2011

The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics

por Beck, Scarlet, Michalski, Annette, Raether, Oliver, Lubeck, Markus, Kaspar, Stephanie, Goedecke, Niels, Baessmann, Carsten, Hornburg, Daniel, Meier, Florian, Paron, Igor, Kulak, Nils A., Cox, Juergen, Mann, Matthias
Publicado 2015

Ultra High Resolution Linear Ion Trap Orbitrap Mass Spectrometer (Orbitrap Elite) Facilitates Top Down LC MS/MS and Versatile Peptide Fragmentation Modes

por Michalski, Annette, Damoc, Eugen, Lange, Oliver, Denisov, Eduard, Nolting, Dirk, Müller, Mathias, Viner, Rosa, Schwartz, Jae, Remes, Philip, Belford, Michael, Dunyach, Jean-Jacques, Cox, Juergen, Horning, Stevan, Mann, Matthias, Makarov, Alexander
Publicado 2012

Guidelines for Genome-Scale Analysis of Biological Rhythms

por Hughes, Michael E., Abruzzi, Katherine C., Allada, Ravi, Anafi, Ron, Arpat, Alaaddin Bulak, Asher, Gad, Baldi, Pierre, de Bekker, Charissa, Bell-Pedersen, Deborah, Blau, Justin, Brown, Steve, Ceriani, M. Fernanda, Chen, Zheng, Chiu, Joanna C., Cox, Juergen, Crowell, Alexander M., DeBruyne, Jason P., Dijk, Derk-Jan, DiTacchio, Luciano, Doyle, Francis J., Duffield, Giles E., Dunlap, Jay C., Eckel-Mahan, Kristin, Esser, Karyn A., FitzGerald, Garret A., Forger, Daniel B., Francey, Lauren J., Fu, Ying-Hui, Gachon, Frédéric, Gatfield, David, de Goede, Paul, Golden, Susan S., Green, Carla, Harer, John, Harmer, Stacey, Haspel, Jeff, Hastings, Michael H., Herzel, Hanspeter, Herzog, Erik D., Hoffmann, Christy, Hong, Christian, Hughey, Jacob J., Hurley, Jennifer M., de la Iglesia, Horacio O., Johnson, Carl, Kay, Steve A., Koike, Nobuya, Kornacker, Karl, Kramer, Achim, Lamia, Katja, Leise, Tanya, Lewis, Scott A., Li, Jiajia, Li, Xiaodong, Liu, Andrew C., Loros, Jennifer J., Martino, Tami A., Menet, Jerome S., Merrow, Martha, Millar, Andrew J., Mockler, Todd, Naef, Felix, Nagoshi, Emi, Nitabach, Michael N., Olmedo, Maria, Nusinow, Dmitri A., Ptáček, Louis J., Rand, David, Reddy, Akhilesh B., Robles, Maria S., Roenneberg, Till, Rosbash, Michael, Ruben, Marc D., Rund, Samuel S.C., Sancar, Aziz, Sassone-Corsi, Paolo, Sehgal, Amita, Sherrill-Mix, Scott, Skene, Debra J., Storch, Kai-Florian, Takahashi, Joseph S., Ueda, Hiroki R., Wang, Han, Weitz, Charles, Westermark, Pål O., Wijnen, Herman, Xu, Ying, Wu, Gang, Yoo, Seung-Hee, Young, Michael, Zhang, Eric Erquan, Zielinski, Tomasz, Hogenesch, John B.
Publicado 2017