A method for high-throughput gene expression signature analysis

por Peck, David, Crawford, Emily D, Ross, Kenneth N, Stegmaier, Kimberly, Golub, Todd R, Lamb, Justin
Publicado 2006

Plasmid-free CRISPR/Cas9 genome editing in Plasmodium falciparum confirms mutations conferring resistance to the dihydroisoquinolone clinical candidate SJ733

por Crawford, Emily D., Quan, Jenai, Horst, Jeremy A., Ebert, Daniel, Wu, Wesley, DeRisi, Joseph L.
Publicado 2017

Reduced Insulin/IGF-1 Signaling Restores the Dynamic Properties of Key Stress Granule Proteins during Aging

por Lechler, Marie C., Crawford, Emily D., Groh, Nicole, Widmaier, Katja, Jung, Raimund, Kirstein, Janine, Trinidad, Jonathan C., Burlingame, Alma L., David, Della C.
Publicado 2017

Sentinel Case of Candida auris in the Western United States Following Prolonged Occult Colonization in a Returned Traveler from India

por Woodworth, Michael H., Dynerman, David, Crawford, Emily D., Doernberg, Sarah B., Ramirez-Avila, Lynn, Serpa, Paula Hayakawa, Nichols, Amy, Li, Lucy M., Lyden, Amy, Tato, Cristina M., Miller, Steve, Derisi, Joseph L., Langelier, Charles
Publicado 2019

FLASH-TB: an Application of Next-Generation CRISPR to Detect Drug Resistant Tuberculosis from Direct Sputum

por Tram, Trinh Thi Bich, Ha, Vu Thi Ngoc, Trieu, Le Pham Tien, Ashton, Philip M., Crawford, Emily D., Thu, Do Dang Anh, Quang, Nguyen Le, Thwaites, Guy E., Walker, Timothy M., Anscombe, Catherine, Thuong, Nguyen Thuy Thuong
Publicado 2023

Metronidazole treatment rapidly reduces genital inflammation through effects on bacterial vaginosis–associated bacteria rather than lactobacilli

por Armstrong, Eric, Hemmerling, Anke, Miller, Steve, Burke, Kerianne E., Newmann, Sara J., Morris, Sheldon R., Reno, Hilary, Huibner, Sanja, Kulikova, Maria, Liu, Rachel, Crawford, Emily D., Castañeda, Gloria R., Nagelkerke, Nico, Coburn, Bryan, Cohen, Craig R., Kaul, Rupert
Publicado 2022

Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens

por Doan, Thuy, Wilson, Michael R., Crawford, Emily D., Chow, Eric D., Khan, Lillian M., Knopp, Kristeene A., O’Donovan, Brian D., Xia, Dongxiang, Hacker, Jill K., Stewart, Jay M., Gonzales, John A., Acharya, Nisha R., DeRisi, Joseph L.
Publicado 2016

Erratum to: Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens

por Doan, Thuy, Wilson, Michael R., Crawford, Emily D., Chow, Eric D., Khan, Lillian M., Knopp, Kristeene A., O’Donovan, Brian D., Xia, Dongxiang, Hacker, Jill K., Stewart, Jay M., Gonzales, John A., Acharya, Nisha R., DeRisi, Joseph L.
Publicado 2016

Genomic and serologic characterization of enterovirus A71 brainstem encephalitis

por Leon, Kristoffer E., Schubert, Ryan D., Casas-Alba, Didac, Hawes, Isobel A., Ramachandran, Prashanth S., Ramesh, Akshaya, Pak, John E., Wu, Wesley, Cheung, Carly K., Crawford, Emily D., Khan, Lillian M., Launes, Cristian, Sample, Hannah A., Zorn, Kelsey C., Cabrerizo, Maria, Valero-Rello, Ana, Langelier, Charles, Muñoz-Almagro, Carmen, DeRisi, Joseph L., Wilson, Michael R.
Publicado 2020

Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children

por Zinter, Matt S, Dvorak, Christopher C, Mayday, Madeline Y, Iwanaga, Kensho, Ly, Ngoc P, McGarry, Meghan E, Church, Gwynne D, Faricy, Lauren E, Rowan, Courtney M, Hume, Janet R, Steiner, Marie E, Crawford, Emily D, Langelier, Charles, Kalantar, Katrina, Chow, Eric D, Miller, Steve, Shimano, Kristen, Melton, Alexis, Yanik, Gregory A, Sapru, Anil, DeRisi, Joseph L
Publicado 2019

Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults

por Langelier, Charles, Kalantar, Katrina L., Moazed, Farzad, Wilson, Michael R., Crawford, Emily D., Deiss, Thomas, Belzer, Annika, Bolourchi, Samaneh, Caldera, Saharai, Fung, Monica, Jauregui, Alejandra, Malcolm, Katherine, Lyden, Amy, Khan, Lillian, Vessel, Kathryn, Quan, Jenai, Zinter, Matt, Chiu, Charles Y., Chow, Eric D., Wilson, Jenny, Miller, Steve, Matthay, Michael A., Pollard, Katherine S., Christenson, Stephanie, Calfee, Carolyn S., DeRisi, Joseph L.
Publicado 2018

FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences

por Quan, Jenai, Langelier, Charles, Kuchta, Alison, Batson, Joshua, Teyssier, Noam, Lyden, Amy, Caldera, Saharai, McGeever, Aaron, Dimitrov, Boris, King, Ryan, Wilheim, Jordan, Murphy, Maxwell, Ares, Lara Pesce, Travisano, Katherine A, Sit, Rene, Amato, Roberto, Mumbengegwi, Davis R, Smith, Jennifer L, Bennett, Adam, Gosling, Roly, Mourani, Peter M, Calfee, Carolyn S, Neff, Norma F, Chow, Eric D, Kim, Peter S, Greenhouse, Bryan, DeRisi, Joseph L, Crawford, Emily D
Publicado 2019

Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens

por Saha, Senjuti, Ramesh, Akshaya, Kalantar, Katrina, Malaker, Roly, Hasanuzzaman, Md, Khan, Lillian M., Mayday, Madeline Y., Sajib, M. S. I., Li, Lucy M., Langelier, Charles, Rahman, Hafizur, Crawford, Emily D., Tato, Cristina M., Islam, Maksuda, Juan, Yun-Fang, de Bourcy, Charles, Dimitrov, Boris, Wang, James, Tang, Jennifer, Sheu, Jonathan, Egger, Rebecca, De Carvalho, Tiago Rodrigues, Wilson, Michael R., Saha, Samir K., DeRisi, Joseph L.
Publicado 2019

Identification of a Polymorphism in the N Gene of SARS-CoV-2 That Adversely Impacts Detection by Reverse Transcription-PCR

por Vanaerschot, Manu, Mann, Sabrina A., Webber, James T., Kamm, Jack, Bell, Sidney M., Bell, John, Hong, Si Noon, Nguyen, Minh Phuong, Chan, Lienna Y., Bhatt, Karan D., Tan, Michelle, Detweiler, Angela M., Espinosa, Alex, Wu, Wesley, Batson, Joshua, Dynerman, David, Wadford, Debra A., Puschnik, Andreas S., Neff, Norma, Ahyong, Vida, Miller, Steve, Ayscue, Patrick, Tato, Cristina M., Paul, Simon, Kistler, Amy L., DeRisi, Joseph L., Crawford, Emily D.
Publicado 2020

Amplification-free detection of SARS-CoV-2 with CRISPR-Cas13a and mobile phone microscopy

por Fozouni, Parinaz, Son, Sungmin, Díaz de León Derby, María, Knott, Gavin J., Gray, Carley N., D’Ambrosio, Michael V., Zhao, Chunyu, Switz, Neil A., Kumar, G. Renuka, Stephens, Stephanie I., Boehm, Daniela, Tsou, Chia-Lin, Shu, Jeffrey, Bhuiya, Abdul, Armstrong, Maxim, Harris, Andrew R., Chen, Pei-Yi, Osterloh, Jeannette M., Meyer-Franke, Anke, Joehnk, Bastian, Walcott, Keith, Sil, Anita, Langelier, Charles, Pollard, Katherine S., Crawford, Emily D., Puschnik, Andreas S., Phelps, Maira, Kistler, Amy, DeRisi, Joseph L., Doudna, Jennifer A., Fletcher, Daniel A., Ott, Melanie
Publicado 2021

Pan-viral serology implicates enteroviruses in acute flaccid myelitis

por Schubert, Ryan D., Hawes, Isobel A., Ramachandran, Prashanth S., Ramesh, Akshaya, Crawford, Emily D., Pak, John E., Wu, Wesley, Cheung, Carly K., O’Donovan, Brian D., Tato, Cristina M., Lyden, Amy, Tan, Michelle, Sit, Rene, Sowa, Gavin A., Sample, Hannah A., Zorn, Kelsey C., Banerji, Debarko, Khan, Lillian M., Bove, Riley, Hauser, Stephen L., Gelfand, Amy A., Johnson-Kerner, Bethany, Nash, Kendall, Krishnamoorthy, Kalpathy S., Chitnis, Tanuja, Ding, Joy Z., McMillan, Hugh J., Chiu, Charles Y., Briggs, Benjamin, Glaser, Carol A., Yen, Cynthia, Chu, Victoria, Wadford, Debra A., Dominguez, Samuel R., Fei Fan Ng, Terry, Marine, Rachel L., Lopez, Adriana S., Nix, W. Allan, Soldatos, Ariane, Gorman, Mark P., Benson, Leslie, Messacar, Kevin, Konopka-Anstadt, Jennifer L., Oberste, M. Steven, DeRisi, Joseph L., Wilson, Michael R.
Publicado 2019

Rapid deployment of SARS-CoV-2 testing: The CLIAHUB

por Crawford, Emily D., Acosta, Irene, Ahyong, Vida, Anderson, Erika C., Arevalo, Shaun, Asarnow, Daniel, Axelrod, Shannon, Ayscue, Patrick, Azimi, Camillia S., Azumaya, Caleigh M., Bachl, Stefanie, Bachmutsky, Iris, Bhaduri, Aparna, Brown, Jeremy Bancroft, Batson, Joshua, Behnert, Astrid, Boileau, Ryan M., Bollam, Saumya R., Bonny, Alain R., Booth, David, Borja, Michael Jerico B., Brown, David, Buie, Bryan, Burnett, Cassandra E., Byrnes, Lauren E., Cabral, Katelyn A., Cabrera, Joana P., Caldera, Saharai, Canales, Gabriela, Castañeda, Gloria R., Chan, Agnes Protacio, Chang, Christopher R., Charles-Orszag, Arthur, Cheung, Carly, Chio, Unseng, Chow, Eric D., Citron, Y. Rose, Cohen, Allison, Cohn, Lillian B., Chiu, Charles, Cole, Mitchel A., Conrad, Daniel N., Constantino, Angela, Cote, Andrew, Crayton-Hall, Tre’Jon, Darmanis, Spyros, Detweiler, Angela M., Dial, Rebekah L., Dong, Shen, Duarte, Elias M., Dynerman, David, Egger, Rebecca, Fanton, Alison, Frumm, Stacey M., Fu, Becky Xu Hua, Garcia, Valentina E., Garcia, Julie, Gladkova, Christina, Goldman, Miriam, Gomez-Sjoberg, Rafael, Gordon, M. Grace, Grove, James C. R., Gupta, Shweta, Haddjeri-Hopkins, Alexis, Hadley, Pierce, Haliburton, John, Hao, Samantha L., Hartoularos, George, Herrera, Nadia, Hilberg, Melissa, Ho, Kit Ying E., Hoppe, Nicholas, Hosseinzadeh, Shayan, Howard, Conor J., Hussmann, Jeffrey A., Hwang, Elizabeth, Ingebrigtsen, Danielle, Jackson, Julia R., Jowhar, Ziad M., Kain, Danielle, Kim, James Y. S., Kistler, Amy, Kreutzfeld, Oriana, Kulsuptrakul, Jessie, Kung, Andrew F., Langelier, Charles, Laurie, Matthew T., Lee, Lena, Leng, Kun, Leon, Kristoffer E., Leonetti, Manuel D., Levan, Sophia R., Li, Sam, Li, Aileen W., Liu, Jamin, Lubin, Heidi S., Lyden, Amy, Mann, Jennifer, Mann, Sabrina, Margulis, Gorica, Marquez, Diana M., Marsh, Bryan P., Martyn, Calla, McCarthy, Elizabeth E., McGeever, Aaron, Merriman, Alexander F., Meyer, Lauren K., Miller, Steve, Moore, Megan K., Mowery, Cody T., Mukhtar, Tanzila, Mwakibete, Lusajo L., Narez, Noelle, Neff, Norma F., Osso, Lindsay A., Oviedo, Diter, Peng, Suping, Phelps, Maira, Phong, Kiet, Picard, Peter, Pieper, Lindsey M., Pincha, Neha, Pisco, Angela Oliveira, Pogson, Angela, Pourmal, Sergei, Puccinelli, Robert R., Puschnik, Andreas S., Rackaityte, Elze, Raghavan, Preethi, Raghavan, Madhura, Reese, James, Replogle, Joseph M., Retallack, Hanna, Reyes, Helen, Rose, Donald, Rosenberg, Marci F., Sanchez-Guerrero, Estella, Sattler, Sydney M., Savy, Laura, See, Stephanie K., Sellers, Kristin K., Serpa, Paula Hayakawa, Sheehy, Maureen, Sheu, Jonathan, Silas, Sukrit, Streithorst, Jessica A., Strickland, Jack, Stryke, Doug, Sunshine, Sara, Suslow, Peter, Sutanto, Renaldo, Tamura, Serena, Tan, Michelle, Tan, Jiongyi, Tang, Alice, Tato, Cristina M., Taylor, Jack C., Tenvooren, Iliana, Thompson, Erin M., Thornborrow, Edward C., Tse, Eric, Tung, Tony, Turner, Marc L., Turner, Victoria S., Turnham, Rigney E., Turocy, Mary J., Vaidyanathan, Trisha V., Vainchtein, Ilia D., Vanaerschot, Manu, Vazquez, Sara E., Wandler, Anica M., Wapniarski, Anne, Webber, James T., Weinberg, Zara Y., Westbrook, Alexandra, Wong, Allison W., Wong, Emily, Worthington, Gajus, Xie, Fang, Xu, Albert, Yamamoto, Terrina, Yang, Ying, Yarza, Fauna, Zaltsman, Yefim, Zheng, Tina, DeRisi, Joseph L.
Publicado 2020