F-Seq: a feature density estimator for high-throughput sequence tags

por Boyle, Alan P., Guinney, Justin, Crawford, Gregory E., Furey, Terrence S.
Publicado 2008

HDAC inhibitors cause site-specific chromatin remodeling at PU.1-bound enhancers in K562 cells

por Frank, Christopher L., Manandhar, Dinesh, Gordân, Raluca, Crawford, Gregory E.
Publicado 2016

Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection

por Yardımcı, Galip Gürkan, Frank, Christopher L., Crawford, Gregory E., Ohler, Uwe
Publicado 2014

DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types

por Winter, Deborah R., Song, Lingyun, Mukherjee, Sayan, Furey, Terrence S., Crawford, Gregory E.
Publicado 2013

Predicting cell-type–specific gene expression from regions of open chromatin

por Natarajan, Anirudh, Yardımcı, Galip Gürkan, Sheffield, Nathan C., Crawford, Gregory E., Ohler, Uwe
Publicado 2012

Comparative Analyses of Chromatin Landscape in White Adipose Tissue Suggest Humans May Have Less Beigeing Potential than Other Primates

por Swain-Lenz, Devjanee, Berrio, Alejandro, Safi, Alexias, Crawford, Gregory E, Wray, Gregory A
Publicado 2019

Mapping nucleosome positions using DNase-seq

por Zhong, Jianling, Luo, Kaixuan, Winter, Peter S., Crawford, Gregory E., Iversen, Edwin S., Hartemink, Alexander J.
Publicado 2016

A complex intronic enhancer regulates expression of the CFTR gene by direct interaction with the promoter

por Ott, Christopher J, Suszko, Magdalena, Blackledge, Neil P, Wright, Jane E, Crawford, Gregory E, Harris, Ann
Publicado 2009

Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha

por Davison, James M., Lickwar, Colin R., Song, Lingyun, Breton, Ghislain, Crawford, Gregory E., Rawls, John F.
Publicado 2017

Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

por Lee, Dongwon, Kapoor, Ashish, Safi, Alexias, Song, Lingyun, Halushka, Marc K., Crawford, Gregory E., Chakravarti, Aravinda
Publicado 2018

Assembly of the Dystrophin-Associated Protein Complex Does Not Require the Dystrophin Cooh-Terminal Domain

por Crawford, Gregory E., Faulkner, John A., Crosbie, Rachelle H., Campbell, Kevin P., Froehner, Stanley C., Chamberlain, Jeffrey S.
Publicado 2000

Notch signaling genes: Myogenic DNA hypomethylation and 5-hydroxymethylcytosine

por Terragni, Jolyon, Zhang, Guoqiang, Sun, Zhiyi, Pradhan, Sriharsa, Song, Lingyun, Crawford, Gregory E, Lacey, Michelle, Ehrlich, Melanie
Publicado 2014

Interactions of Chromatin Context, Binding Site Sequence Content, and Sequence Evolution in Stress-Induced p53 Occupancy and Transactivation

por Su, Dan, Wang, Xuting, Campbell, Michelle R., Song, Lingyun, Safi, Alexias, Crawford, Gregory E., Bell, Douglas A.
Publicado 2015

Comparative Serum Challenges Show Divergent Patterns of Gene Expression and Open Chromatin in Human and Chimpanzee

por Pizzollo, Jason, Nielsen, William J, Shibata, Yoichiro, Safi, Alexias, Crawford, Gregory E, Wray, Gregory A, Babbitt, Courtney C
Publicado 2018

DNaseI hypersensitivity at gene-poor, FSH dystrophy-linked 4q35.2

por Xu, Xueqing, Tsumagari, Koji, Sowden, Janet, Tawil, Rabi, Boyle, Alan P., Song, Lingyun, Furey, Terrence S., Crawford, Gregory E., Ehrlich, Melanie
Publicado 2009

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

por Sheffield, Nathan C., Thurman, Robert E., Song, Lingyun, Safi, Alexias, Stamatoyannopoulos, John A., Lenhard, Boris, Crawford, Gregory E., Furey, Terrence S.
Publicado 2013

Gene expression during normal and FSHD myogenesis

por Tsumagari, Koji, Chang, Shao-Chi, Lacey, Michelle, Baribault, Carl, Chittur, Sridar V, Sowden, Janet, Tawil, Rabi, Crawford, Gregory E, Ehrlich, Melanie
Publicado 2011

Characterization of enhancer activity in early human neurodevelopment using Massively parallel reporter assay (MPRA) and forebrain organoids

por Capauto, Davide, Wang, Yifan, Wu, Feinan, Norton, Scott, Mariani, Jessica, Inoue, Fumitaka, Crawford, Gregory E., Ahituv, Nadav, Abyzov, Alexej, Vaccarino, Flora M.
Publicado 2023

Epigenome editing by a CRISPR/Cas9-based acetyltransferase activates genes from promoters and enhancers

por Hilton, Isaac B., D’Ippolito, Anthony M., Vockley, Christopher M., Thakore, Pratiksha I., Crawford, Gregory E., Reddy, Timothy E., Gersbach, Charles A.
Publicado 2015

DNA methylation and differentiation: HOX genes in muscle cells

por Tsumagari, Koji, Baribault, Carl, Terragni, Jolyon, Chandra, Sruti, Renshaw, Chloe, Sun, Zhiyi, Song, Lingyun, Crawford, Gregory E, Pradhan, Sriharsa, Lacey, Michelle, Ehrlich, Melanie
Publicado 2013