alignparse: A Python package for parsing complex features from high-throughput long-read sequencing

por Crawford, Katharine H.D., Bloom, Jesse D.
Publicado 2019

Attenuated influenza virions expressing the SARS-CoV-2 receptor-binding domain induce neutralizing antibodies in mice

por Loes, Andrea N., Gentles, Lauren E., Greaney, Allison J., Crawford, Katharine H. D., Bloom, Jesse D.
Publicado 2020

Attenuated Influenza Virions Expressing the SARS-CoV-2 Receptor-Binding Domain Induce Neutralizing Antibodies in Mice

por Loes, Andrea N., Gentles, Lauren E., Greaney, Allison J., Crawford, Katharine H. D., Bloom, Jesse D.
Publicado 2020

Phage-DMS: A Comprehensive Method for Fine Mapping of Antibody Epitopes

por Garrett, Meghan E., Itell, Hannah L., Crawford, Katharine H.D., Basom, Ryan, Bloom, Jesse D., Overbaugh, Julie
Publicado 2020

Comprehensive mapping of mutations in the SARS-CoV-2 receptor-binding domain that affect recognition by polyclonal human plasma antibodies

por Greaney, Allison J., Loes, Andrea N., Crawford, Katharine H.D., Starr, Tyler N., Malone, Keara D., Chu, Helen Y., Bloom, Jesse D.
Publicado 2021

Neutralizing Antibodies Correlate with Protection from SARS-CoV-2 in Humans during a Fishery Vessel Outbreak with a High Attack Rate

por Addetia, Amin, Crawford, Katharine H. D., Dingens, Adam, Zhu, Haiying, Roychoudhury, Pavitra, Huang, Meei-Li, Jerome, Keith R., Bloom, Jesse D., Greninger, Alexander L.
Publicado 2020

A human coronavirus evolves antigenically to escape antibody immunity

por Eguia, Rachel T., Crawford, Katharine H. D., Stevens-Ayers, Terry, Kelnhofer-Millevolte, Laurel, Greninger, Alexander L., Englund, Janet A., Boeckh, Michael J., Bloom, Jesse D.
Publicado 2021

Mapping the neutralizing specificity of human anti-HIV serum by deep mutational scanning

por Radford, Caelan E., Schommers, Philipp, Gieselmann, Lutz, Crawford, Katharine H. D., Dadonaite, Bernadeta, Yu, Timothy C., Dingens, Adam S., Overbaugh, Julie, Klein, Florian, Bloom, Jesse D.
Publicado 2023

Mapping the neutralizing specificity of human anti-HIV serum by deep mutational scanning

por Radford, Caelan E., Schommers, Philipp, Gieselmann, Lutz, Crawford, Katharine H.D., Dadonaite, Bernadeta, Yu, Timothy C., Dingens, Adam S., Overbaugh, Julie, Klein, Florian, Bloom, Jesse D.
Publicado 2023

The SARS-CoV-2 mRNA-1273 vaccine elicits more RBD-focused neutralization, but with broader antibody binding within the RBD

por Greaney, Allison J., Loes, Andrea N., Gentles, Lauren E., Crawford, Katharine H.D., Starr, Tyler N., Malone, Keara D., Chu, Helen Y., Bloom, Jesse D.
Publicado 2021

Antibodies elicited by mRNA-1273 vaccination bind more broadly to the receptor binding domain than do those from SARS-CoV-2 infection

por Greaney, Allison J., Loes, Andrea N., Gentles, Lauren E., Crawford, Katharine H.D., Starr, Tyler N., Malone, Keara D., Chu, Helen Y., Bloom, Jesse D.
Publicado 2021

Deep mutational scanning of SARS-CoV-2 receptor binding domain reveals constraints on folding and ACE2 binding

por Starr, Tyler N., Greaney, Allison J., Hilton, Sarah K., Crawford, Katharine H.D., Navarro, Mary Jane, Bowen, John E., Tortorici, M. Alejandra, Walls, Alexandra C., Veesler, David, Bloom, Jesse D.
Publicado 2020

A pseudovirus system enables deep mutational scanning of the full SARS-CoV-2 spike

por Dadonaite, Bernadeta, Crawford, Katharine H D, Radford, Caelan E, Farrell, Ariana G, Yu, Timothy C, Hannon, William W, Zhou, Panpan, Andrabi, Raiees, Burton, Dennis R, Liu, Lihong, Ho, David D., Neher, Richard A., Bloom, Jesse D
Publicado 2022

Deep Mutational Scanning of SARS-CoV-2 Receptor Binding Domain Reveals Constraints on Folding and ACE2 Binding

por Starr, Tyler N., Greaney, Allison J., Hilton, Sarah K., Ellis, Daniel, Crawford, Katharine H.D., Dingens, Adam S., Navarro, Mary Jane, Bowen, John E., Tortorici, M. Alejandra, Walls, Alexandra C., King, Neil P., Veesler, David, Bloom, Jesse D.
Publicado 2020

Protocol and Reagents for Pseudotyping Lentiviral Particles with SARS-CoV-2 Spike Protein for Neutralization Assays

por Crawford, Katharine H. D., Eguia, Rachel, Dingens, Adam S., Loes, Andrea N., Malone, Keara D., Wolf, Caitlin R., Chu, Helen Y., Tortorici, M. Alejandra, Veesler, David, Murphy, Michael, Pettie, Deleah, King, Neil P., Balazs, Alejandro B., Bloom, Jesse D.
Publicado 2020

Epitope profiling reveals binding signatures of SARS-CoV-2 immune response in natural infection and cross-reactivity with endemic human CoVs

por Stoddard, Caitlin I., Galloway, Jared, Chu, Helen Y., Shipley, Mackenzie M., Sung, Kevin, Itell, Hannah L., Wolf, Caitlin R., Logue, Jennifer K., Magedson, Ariana, Garrett, Meghan E., Crawford, Katharine H.D., Laserson, Uri, Matsen, Frederick A., Overbaugh, Julie
Publicado 2021

Dynamics of Neutralizing Antibody Titers in the Months After Severe Acute Respiratory Syndrome Coronavirus 2 Infection

por Crawford, Katharine H D, Dingens, Adam S, Eguia, Rachel, Wolf, Caitlin R, Wilcox, Naomi, Logue, Jennifer K, Shuey, Kiel, Casto, Amanda M, Fiala, Brooke, Wrenn, Samuel, Pettie, Deleah, King, Neil P, Greninger, Alexander L, Chu, Helen Y, Bloom, Jesse D
Publicado 2020

A pseudovirus system enables deep mutational scanning of the full SARS-CoV-2 spike

por Dadonaite, Bernadeta, Crawford, Katharine H.D., Radford, Caelan E., Farrell, Ariana G., Yu, Timothy C., Hannon, William W., Zhou, Panpan, Andrabi, Raiees, Burton, Dennis R., Liu, Lihong, Ho, David D., Chu, Helen Y., Neher, Richard A., Bloom, Jesse D.
Publicado 2023

Dynamics of infection-elicited SARS-CoV-2 antibodies in children over time

por Gentles, Lauren E., Kehoe, Leanne, Crawford, Katharine H.D., Lacombe, Kirsten, Dickerson, Jane, Wolf, Caitlin, Yuan, Joanna, Schuler, Susanna, Watson, John T., Nyanseor, Sankan, Briggs-Hagen, Melissa, Saydah, Sharon, Midgley, Claire M., Pringle, Kimberly, Chu, Helen, Bloom, Jesse D., Englund, Janet A.
Publicado 2022

Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020

por Hodcroft, Emma B., Zuber, Moira, Nadeau, Sarah, Vaughan, Timothy G., Crawford, Katharine H. D., Althaus, Christian L., Reichmuth, Martina L., Bowen, John E., Walls, Alexandra C., Corti, Davide, Bloom, Jesse D., Veesler, David, Mateo, David, Hernando, Alberto, Comas, Iñaki, González Candelas, Fernando, Stadler, Tanja, Neher, Richard A.
Publicado 2021