Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus

por Creason, Allison L., Davis, Edward W., Putnam, Melodie L., Vandeputte, Olivier M., Chang, Jeff H.
Publicado 2014

Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine

por Gu, Qiang, Kumar, Anup, Bray, Simon, Creason, Allison, Khanteymoori, Alireza, Jalili, Vahid, Grüning, Björn, Goecks, Jeremy
Publicado 2021

Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum

por Kimbrel, Jeffrey A., Thomas, William J., Jiang, Yuan, Creason, Allison L., Thireault, Caitlin A., Sachs, Joel L., Chang, Jeff H.
Publicado 2013

Phytopathogenic Rhodococcus Have Diverse Plasmids With Few Conserved Virulence Functions

por Savory, Elizabeth A., Weisberg, Alexandra J., Stevens, Danielle M., Creason, Allison L., Fuller, Skylar L., Pearce, Emma M., Chang, Jeff H.
Publicado 2020

An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6

por Kimbrel, Jeffrey A, Givan, Scott A, Halgren, Anne B, Creason, Allison L, Mills, Dallice I, Banowetz, Gary M, Armstrong, Donald J, Chang, Jeff H
Publicado 2010

Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges

por Ellrott, Kyle, Buchanan, Alex, Creason, Allison, Mason, Michael, Schaffter, Thomas, Hoff, Bruce, Eddy, James, Chilton, John M., Yu, Thomas, Stuart, Joshua M., Saez-Rodriguez, Julio, Stolovitzky, Gustavo, Boutros, Paul C., Guinney, Justin
Publicado 2019

Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management

por Savory, Elizabeth A, Fuller, Skylar L, Weisberg, Alexandra J, Thomas, William J, Gordon, Michael I, Stevens, Danielle M, Creason, Allison L, Belcher, Michael S, Serdani, Maryna, Wiseman, Michele S, Grünwald, Niklaus J, Putnam, Melodie L, Chang, Jeff H
Publicado 2017

Correction: Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management

por Savory, Elizabeth A, Fuller, Skylar L, Weisberg, Alexandra J, Thomas, William J, Gordon, Michael I, Stevens, Danielle M, Creason, Allison L, Belcher, Michael S, Serdani, Maryna, Wiseman, Michele S, Grünwald, Niklaus J, Putnam, Melodie L, Chang, Jeff H
Publicado 2018

Addressing persistent challenges in digital image analysis of cancerous tissues

por Prabhakaran, Sandhya, Yapp, Clarence, Baker, Gregory J., Beyer, Johanna, Chang, Young Hwan, Creason, Allison L., Krueger, Robert, Muhlich, Jeremy, Patterson, Nathan Heath, Sidak, Kevin, Sudar, Damir, Taylor, Adam J., Ternes, Luke, Troidl, Jakob, Xie, Yubin, Sokolov, Artem, Tyson, Darren R.
Publicado 2023

Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci

por Creason, Allison L., Vandeputte, Olivier M., Savory, Elizabeth A., Davis, Edward W., Putnam, Melodie L., Hu, Erdong, Swader-Hines, David, Mol, Adeline, Baucher, Marie, Prinsen, Els, Zdanowska, Magdalena, Givan, Scott A., Jaziri, Mondher El, Loper, Joyce E., Mahmud, Taifo, Chang, Jeff H.
Publicado 2014

Characterizing advanced breast cancer heterogeneity and treatment resistance through serial biopsies and comprehensive analytics

por Li, Allen, Keck, Jamie M., Parmar, Swapnil, Patterson, Janice, Labrie, Marilyne, Creason, Allison L., Johnson, Brett E., Downey, Molly, Thomas, George, Beadling, Carol, Heiser, Laura M., Kolodzie, Annette, Guimaraes, Alexander R., Corless, Christopher L., Gray, Joe W., Mills, Gordon B., Bergan, Raymond C., Mitri, Zahi I.
Publicado 2021

Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies

por Labrie, Marilyne, Li, Allen, Creason, Allison, Betts, Courtney, Keck, Jamie, Johnson, Brett, Sivagnanam, Shamilene, Boniface, Christopher, Ma, Hongli, Blucher, Aurora, Chang, Young Hwan, Chin, Koei, Vuky, Jacqueline, Guimaraes, Alexander R., Downey, Molly, Lim, Jeong Youn, Gao, Lina, Siex, Kiara, Parmar, Swapnil, Kolodzie, Annette, Spellman, Paul T., Goecks, Jeremy, Coussens, Lisa M., Corless, Christopher L., Bergan, Raymond, Gray, Joe W., Mills, Gordon B., Mitri, Zahi I.
Publicado 2021

MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging

por Schapiro, Denis, Sokolov, Artem, Yapp, Clarence, Chen, Yu-An, Muhlich, Jeremy L., Hess, Joshua, Creason, Allison L., Nirmal, Ajit J., Baker, Gregory J., Nariya, Maulik K., Lin, Jia-Ren, Maliga, Zoltan, Jacobson, Connor A., Hodgman, Matthew W., Ruokonen, Juha, Farhi, Samouil L., Abbondanza, Domenic, McKinley, Eliot T., Persson, Daniel, Betts, Courtney, Sivagnanam, Shamilene, Regev, Aviv, Goecks, Jeremy, Coffey, Robert J., Coussens, Lisa M., Santagata, Sandro, Sorger, Peter K.
Publicado 2021

An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer

por Johnson, Brett E., Creason, Allison L., Stommel, Jayne M., Keck, Jamie M., Parmar, Swapnil, Betts, Courtney B., Blucher, Aurora, Boniface, Christopher, Bucher, Elmar, Burlingame, Erik, Camp, Todd, Chin, Koei, Eng, Jennifer, Estabrook, Joseph, Feiler, Heidi S., Heskett, Michael B., Hu, Zhi, Kolodzie, Annette, Kong, Ben L., Labrie, Marilyne, Lee, Jinho, Leyshock, Patrick, Mitri, Souraya, Patterson, Janice, Riesterer, Jessica L., Sivagnanam, Shamilene, Somers, Julia, Sudar, Damir, Thibault, Guillaume, Weeder, Benjamin R., Zheng, Christina, Nan, Xiaolin, Thompson, Reid F., Heiser, Laura M., Spellman, Paul T., Thomas, George, Demir, Emek, Chang, Young Hwan, Coussens, Lisa M., Guimaraes, Alexander R., Corless, Christopher, Goecks, Jeremy, Bergan, Raymond, Mitri, Zahi, Mills, Gordon B., Gray, Joe W.
Publicado 2022