Social networks help to infer causality in the tumor microenvironment

por Crespo, Isaac, Doucey, Marie-Agnès, Xenarios, Ioannis
Publicado 2016

Discrete Logic Modelling Optimization to Contextualize Prior Knowledge Networks Using PRUNET

por Rodriguez, Ana, Crespo, Isaac, Androsova, Ganna, del Sol, Antonio
Publicado 2015

Predicting missing expression values in gene regulatory networks using a discrete logic modeling optimization guided by network stable states

por Crespo, Isaac, Krishna, Abhimanyu, Le Béchec, Antony, del Sol, Antonio
Publicado 2013

Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks

por Crespo, Isaac, Perumal, Thanneer M, Jurkowski, Wiktor, del Sol, Antonio
Publicado 2013

Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease

por Crespo, Isaac, Roomp, Kirsten, Jurkowski, Wiktor, Kitano, Hiroaki, del Sol, Antonio
Publicado 2012

A gene mapping bottleneck in the translational route from zebrafish to human

por de Klein, Niek, Ibberson, Mark, Crespo, Isaac, Rodius, Sophie, Azuaje, Francisco
Publicado 2015

Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method

por Dorier, Julien, Crespo, Isaac, Niknejad, Anne, Liechti, Robin, Ebeling, Martin, Xenarios, Ioannis
Publicado 2016

Identifying biological mechanisms for favorable cancer prognosis using non-hypothesis-driven iterative survival analysis

por Crespo, Isaac, Götz, Lou, Liechti, Robin, Coukos, George, Doucey, Marie-Agnès, Xenarios, Ioannis
Publicado 2016

Predicting combinations of immunomodulators to enhance dendritic cell-based vaccination based on a hybrid experimental and computational platform

por Ahmed, Rita, Crespo, Isaac, Tuyaerts, Sandra, Bekkar, Amel, Graciotti, Michele, Xenarios, Ioannis, Kandalaft, Lana E.
Publicado 2020

Expert curation for building network-based dynamical models: a case study on atherosclerotic plaque formation

por Bekkar, Amel, Estreicher, Anne, Niknejad, Anne, Casals-Casas, Cristina, Bridge, Alan, Xenarios, Ioannis, Dorier, Julien, Crespo, Isaac
Publicado 2018

A Novel Network Integrating a miRNA-203/SNAI1 Feedback Loop which Regulates Epithelial to Mesenchymal Transition

por Moes, Michèle, Le Béchec, Antony, Crespo, Isaac, Laurini, Christina, Halavatyi, Aliaksandr, Vetter, Guillaume, del Sol, Antonio, Friederich, Evelyne
Publicado 2012

Fisetin protects against cardiac cell death through reduction of ROS production and caspases activity

por Rodius, Sophie, de Klein, Niek, Jeanty, Céline, Sánchez-Iranzo, Héctor, Crespo, Isaac, Ibberson, Mark, Xenarios, Ioannis, Dittmar, Gunnar, Mercader, Nadia, Niclou, Simone P., Azuaje, Francisco
Publicado 2020

Global DNA methylation and transcriptional analyses of human ESC-derived cardiomyocytes

por Gu, Ying, Liu, Guang-Hui, Plongthongkum, Nongluk, Benner, Christopher, Yi, Fei, Qu, Jing, Suzuki, Keiichiro, Yang, Jiping, Zhang, Weiqi, Li, Mo, Montserrat, Nuria, Crespo, Isaac, del Sol, Antonio, Esteban, Concepcion Rodriguez, Zhang, Kun, Izpisua Belmonte, Juan Carlos
Publicado 2014

Analysis of the dynamic co-expression network of heart regeneration in the zebrafish

por Rodius, Sophie, Androsova, Ganna, Götz, Lou, Liechti, Robin, Crespo, Isaac, Merz, Susanne, Nazarov, Petr V., de Klein, Niek, Jeanty, Céline, González-Rosa, Juan M., Muller, Arnaud, Bernardin, Francois, Niclou, Simone P., Vallar, Laurent, Mercader, Nadia, Ibberson, Mark, Xenarios, Ioannis, Azuaje, Francisco
Publicado 2016

Orthogonal cytokine engineering enables novel synthetic effector states escaping canonical exhaustion in tumor-rejecting CD8(+) T cells

por Corria-Osorio, Jesus, Carmona, Santiago J., Stefanidis, Evangelos, Andreatta, Massimo, Ortiz-Miranda, Yaquelin, Muller, Tania, Rota, Ioanna A., Crespo, Isaac, Seijo, Bili, Castro, Wilson, Jimenez-Luna, Cristina, Scarpellino, Leonardo, Ronet, Catherine, Spill, Aodrenn, Lanitis, Evripidis, Romero, Pedro, Luther, Sanjiv A., Irving, Melita, Coukos, George
Publicado 2023

Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map

por Fujita, Kazuhiro A., Ostaszewski, Marek, Matsuoka, Yukiko, Ghosh, Samik, Glaab, Enrico, Trefois, Christophe, Crespo, Isaac, Perumal, Thanneer M., Jurkowski, Wiktor, Antony, Paul M. A., Diederich, Nico, Buttini, Manuel, Kodama, Akihiko, Satagopam, Venkata P., Eifes, Serge, del Sol, Antonio, Schneider, Reinhard, Kitano, Hiroaki, Balling, Rudi
Publicado 2013

Angiogenic Activity of Breast Cancer Patients’ Monocytes Reverted by Combined Use of Systems Modeling and Experimental Approaches

por Guex, Nicolas, Crespo, Isaac, Bron, Sylvian, Ifticene-Treboux, Assia, Faes-van’t Hull, Eveline, Kharoubi, Solange, Liechti, Robin, Werffeli, Patricia, Ibberson, Mark, Majo, Francois, Nicolas, Michäel, Laurent, Julien, Garg, Abhishek, Zaman, Khalil, Lehr, Hans-Anton, Stevenson, Brian J., Rüegg, Curzio, Coukos, George, Delaloye, Jean-François, Xenarios, Ioannis, Doucey, Marie-Agnès
Publicado 2015

Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics

por Loviglio, Maria Nicla, Beck, Christine R., White, Janson J., Leleu, Marion, Harel, Tamar, Guex, Nicolas, Niknejad, Anne, Bi, Weimin, Chen, Edward S., Crespo, Isaac, Yan, Jiong, Charng, Wu-Lin, Gu, Shen, Fang, Ping, Coban-Akdemir, Zeynep, Shaw, Chad A., Jhangiani, Shalini N., Muzny, Donna M., Gibbs, Richard A., Rougemont, Jacques, Xenarios, Ioannis, Lupski, James R., Reymond, Alexandre
Publicado 2016

Low-Dose Radiotherapy Reverses Tumor Immune Desertification and Resistance to Immunotherapy

por Herrera, Fernanda G., Ronet, Catherine, Ochoa de Olza, Maria, Barras, David, Crespo, Isaac, Andreatta, Massimo, Corria-Osorio, Jesus, Spill, Aodrenn, Benedetti, Fabrizio, Genolet, Raphael, Orcurto, Angela, Imbimbo, Martina, Ghisoni, Eleonora, Navarro Rodrigo, Blanca, Berthold, Dominik R., Sarivalasis, Apostolos, Zaman, Khalil, Duran, Rafael, Dromain, Clarisse, Prior, John, Schaefer, Niklaus, Bourhis, Jean, Dimopoulou, Georgia, Tsourti, Zoi, Messemaker, Marius, Smith, Thomas, Warren, Sarah E., Foukas, Periklis, Rusakiewicz, Sylvie, Pittet, Mikaël J., Zimmermann, Stefan, Sempoux, Christine, Dafni, Urania, Harari, Alexandre, Kandalaft, Lana E., Carmona, Santiago J., Dangaj Laniti, Denarda, Irving, Melita, Coukos, George
Publicado 2022