Reproducible Research Data Analyses using the Common Workflow Language standards

por Crusoe, Michael R.
Publicado 2017

Channeling Community Contributions to Scientific Software: A Sprint Experience

por Crusoe, Michael R., Brown, C. Titus
Publicado 2016

Walking the Talk: Adopting and Adapting Sustainable Scientific Software Development processes in a Small Biology Lab

por Crusoe, Michael R., Brown, C. Titus
Publicado 2016

Search for computational workflow synergies in reproducible research data analyses in particle physics and life sciences

por Šimko, Tibor, Cranmer, Kyle, Crusoe, Michael R, Heinrich, Lukas, Khodak, Anton, Kousidis, Dinos, Rodrı́guez, Diego
Publicado 2018

Search for computational workflow synergies in reproducible research data analyses in particle physics and life sciences

por Šimko, Tibor, Cranmer, Kyle, Crusoe, Michael R, Heinrich, Lukas, Khodak, Anton, Kousidis, Dinos, Rodrı́guez, Diego
Publicado 2018

Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv

por Khan, Farah Zaib, Soiland-Reyes, Stian, Sinnott, Richard O, Lonie, Andrew, Goble, Carole, Crusoe, Michael R
Publicado 2019

Using bio.tools to generate and annotate workbench tool descriptions

por Hillion, Kenzo-Hugo, Kuzmin, Ivan, Khodak, Anton, Rasche, Eric, Crusoe, Michael, Peterson, Hedi, Ison, Jon, Ménager, Hervé
Publicado 2017

Scalable Workflows and Reproducible Data Analysis for Genomics

por Strozzi, Francesco, Janssen, Roel, Wurmus, Ricardo, Crusoe, Michael R., Githinji, George, Di Tommaso, Paolo, Belhachemi, Dominique, Möller, Steffen, Smant, Geert, de Ligt, Joep, Prins, Pjotr
Publicado 2019

MGnify: the microbiome analysis resource in 2020

por Mitchell, Alex L, Almeida, Alexandre, Beracochea, Martin, Boland, Miguel, Burgin, Josephine, Cochrane, Guy, Crusoe, Michael R, Kale, Varsha, Potter, Simon C, Richardson, Lorna J, Sakharova, Ekaterina, Scheremetjew, Maxim, Korobeynikov, Anton, Shlemov, Alex, Kunyavskaya, Olga, Lapidus, Alla, Finn, Robert D
Publicado 2020

Recommendations for the packaging and containerizing of bioinformatics software

por Gruening, Bjorn, Sallou, Olivier, Moreno, Pablo, da Veiga Leprevost, Felipe, Ménager, Hervé, Søndergaard, Dan, Röst, Hannes, Sachsenberg, Timo, O'Connor, Brian, Madeira, Fábio, Dominguez Del Angel, Victoria, Crusoe, Michael R., Varma, Susheel, Blankenberg, Daniel, Jimenez, Rafael C., Perez-Riverol, Yasset
Publicado 2019

Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience

por Ahmed, Azza E., Mpangase, Phelelani T., Panji, Sumir, Baichoo, Shakuntala, Souilmi, Yassine, Fadlelmola, Faisal M., Alghali, Mustafa, Aron, Shaun, Bendou, Hocine, De Beste, Eugene, Mbiyavanga, Mamana, Souiai, Oussema, Yi, Long, Zermeno, Jennie, Armstrong, Don, O'Connor, Brian D., Mainzer, Liudmila Sergeevna, Crusoe, Michael R., Meintjes, Ayton, Van Heusden, Peter, Botha, Gerrit, Joubert, Fourie, Jongeneel, C. Victor, Hazelhurst, Scott, Mulder, Nicola
Publicado 2019

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

por Baichoo, Shakuntala, Souilmi, Yassine, Panji, Sumir, Botha, Gerrit, Meintjes, Ayton, Hazelhurst, Scott, Bendou, Hocine, Beste, Eugene de, Mpangase, Phelelani T., Souiai, Oussema, Alghali, Mustafa, Yi, Long, O’Connor, Brian D., Crusoe, Michael, Armstrong, Don, Aron, Shaun, Joubert, Fourie, Ahmed, Azza E., Mbiyavanga, Mamana, Heusden, Peter van, Magosi, Lerato E., Zermeno, Jennie, Mainzer, Liudmila Sergeevna, Fadlelmola, Faisal M., Jongeneel, C. Victor, Mulder, Nicola
Publicado 2018

Nine Best Practices for Research Software Registries and Repositories: A Concise Guide

por Monteil, Alain, Gonzalez-Beltran, Alejandra, Ioannidis, Alexandros, Allen, Alice, Lee, Allen, Bandrowski, Anita, Wilson, Bruce E., Mecum, Bryce, Du, Cai Fan, Robinson, Carly, Garijo, Daniel, Katz, Daniel S., Long, David, Milliken, Genevieve, Ménager, Hervé, Hausman, Jessica, Spaaks, Jurriaan H., Fenlon, Katrina, Vanderbilt, Kristin, Hwang, Lorraine, Davis, Lynn, Fenner, Martin, Crusoe, Michael R., Hucka, Michael, Wu, Mingfang, Hong, Neil Chue, Teuben, Peter, Stall, Shelley, Druskat, Stephan, Carnevale, Ted, Morrell, Thomas
Publicado 2020

Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards

por Tollis, Marc, Hutchins, Elizabeth D, Stapley, Jessica, Rupp, Shawn M, Eckalbar, Walter L, Maayan, Inbar, Lasku, Eris, Infante, Carlos R, Dennis, Stuart R, Robertson, Joel A, May, Catherine M, Crusoe, Michael R, Bermingham, Eldredge, DeNardo, Dale F, Hsieh, Shi-Tong Tonia, Kulathinal, Rob J, McMillan, William Owen, Menke, Douglas B, Pratt, Stephen C, Rawls, Jeffery Alan, Sanjur, Oris, Wilson-Rawls, Jeanne, Wilson Sayres, Melissa A, Fisher, Rebecca E, Kusumi, Kenro
Publicado 2018

Perspectives on automated composition of workflows in the life sciences

por Lamprecht, Anna-Lena, Palmblad, Magnus, Ison, Jon, Schwämmle, Veit, Al Manir, Mohammad Sadnan, Altintas, Ilkay, Baker, Christopher J. O., Ben Hadj Amor, Ammar, Capella-Gutierrez, Salvador, Charonyktakis, Paulos, Crusoe, Michael R., Gil, Yolanda, Goble, Carole, Griffin, Timothy J., Groth, Paul, Ienasescu, Hans, Jagtap, Pratik, Kalaš, Matúš, Kasalica, Vedran, Khanteymoori, Alireza, Kuhn, Tobias, Mei, Hailiang, Ménager, Hervé, Möller, Steffen, Richardson, Robin A., Robert, Vincent, Soiland-Reyes, Stian, Stevens, Robert, Szaniszlo, Szoke, Verberne, Suzan, Verhoeven, Aswin, Wolstencroft, Katherine
Publicado 2021

Enabling precision medicine via standard communication of HTS provenance, analysis, and results

por Alterovitz, Gil, Dean, Dennis, Goble, Carole, Crusoe, Michael R., Soiland-Reyes, Stian, Bell, Amanda, Hayes, Anais, Suresh, Anita, Purkayastha, Anjan, King, Charles H., Taylor, Dan, Johanson, Elaine, Thompson, Elaine E., Donaldson, Eric, Morizono, Hiroki, Tsang, Hsinyi, Vora, Jeet K., Goecks, Jeremy, Yao, Jianchao, Almeida, Jonas S., Keeney, Jonathon, Addepalli, KanakaDurga, Krampis, Konstantinos, Smith, Krista M., Guo, Lydia, Walderhaug, Mark, Schito, Marco, Ezewudo, Matthew, Guimera, Nuria, Walsh, Paul, Kahsay, Robel, Gottipati, Srikanth, Rodwell, Timothy C., Bloom, Toby, Lai, Yuching, Simonyan, Vahan, Mazumder, Raja
Publicado 2018

The khmer software package: enabling efficient nucleotide sequence analysis

por Crusoe, Michael R., Alameldin, Hussien F., Awad, Sherine, Boucher, Elmar, Caldwell, Adam, Cartwright, Reed, Charbonneau, Amanda, Constantinides, Bede, Edvenson, Greg, Fay, Scott, Fenton, Jacob, Fenzl, Thomas, Fish, Jordan, Garcia-Gutierrez, Leonor, Garland, Phillip, Gluck, Jonathan, González, Iván, Guermond, Sarah, Guo, Jiarong, Gupta, Aditi, Herr, Joshua R., Howe, Adina, Hyer, Alex, Härpfer, Andreas, Irber, Luiz, Kidd, Rhys, Lin, David, Lippi, Justin, Mansour, Tamer, McA'Nulty, Pamela, McDonald, Eric, Mizzi, Jessica, Murray, Kevin D., Nahum, Joshua R., Nanlohy, Kaben, Nederbragt, Alexander Johan, Ortiz-Zuazaga, Humberto, Ory, Jeramia, Pell, Jason, Pepe-Ranney, Charles, Russ, Zachary N., Schwarz, Erich, Scott, Camille, Seaman, Josiah, Sievert, Scott, Simpson, Jared, Skennerton, Connor T., Spencer, James, Srinivasan, Ramakrishnan, Standage, Daniel, Stapleton, James A., Steinman, Susan R., Stein, Joe, Taylor, Benjamin, Trimble, Will, Wiencko, Heather L., Wright, Michael, Wyss, Brian, Zhang, Qingpeng, zyme, en, Brown, C. Titus
Publicado 2015