Systems Biology Approaches to Understand Natural Products Biosynthesis

por Licona-Cassani, Cuauhtemoc, Cruz-Morales, Pablo, Manteca, Angel, Barona-Gomez, Francisco, Nielsen, Lars K., Marcellin, Esteban
Publicado 2015

Revisiting the Evolution and Taxonomy of Clostridia, a Phylogenomic Update

por Cruz-Morales, Pablo, Orellana, Camila A, Moutafis, George, Moonen, Glenn, Rincon, Gonzalo, Nielsen, Lars K, Marcellin, Esteban
Publicado 2019

Talaropeptides A-D: Structure and Biosynthesis of Extensively N-methylated Linear Peptides From an Australian Marine Tunicate-Derived Talaromyces sp.

por Dewapriya, Pradeep, Khalil, Zeinab G., Prasad, Pritesh, Salim, Angela A., Cruz-Morales, Pablo, Marcellin, Esteban, Capon, Robert J.
Publicado 2018

Diverse Cone-Snail Species Harbor Closely Related Streptomyces Species with Conserved Chemical and Genetic Profiles, Including Polycyclic Tetramic Acid Macrolactams

por Quezada, Michelle, Licona-Cassani, Cuauhtemoc, Cruz-Morales, Pablo, Salim, Angela A., Marcellin, Esteban, Capon, Robert J., Barona-Gómez, Francisco
Publicado 2017

ActDES – a curated Actinobacterial Database for Evolutionary Studies

por Schniete, Jana K., Selem-Mojica, Nelly, Birke, Anna S., Cruz-Morales, Pablo, Hunter, Iain S., Barona-Gomez, Francisco, Hoskisson, Paul A.
Publicado 2021

Draft Genome Sequence of Sphingobacterium sp. CZ-UAM, Isolated from a Methanotrophic Consortium

por Steffani-Vallejo, José Luis, Zuñiga, Cristal, Cruz-Morales, Pablo, Lozano, Luis, Morales, Marcia, Licona-Cassani, Cuauhtemoc, Revah, Sergio, Utrilla, José
Publicado 2017

Expanding Primary Metabolism Helps Generate the Metabolic Robustness To Facilitate Antibiotic Biosynthesis in Streptomyces

por Schniete, Jana K., Cruz-Morales, Pablo, Selem-Mojica, Nelly, Fernández-Martínez, Lorena T., Hunter, Iain S., Barona-Gómez, Francisco, Hoskisson, Paul A.
Publicado 2018

Draft Genome Sequence of Agrobacterium fabrum ARqua1

por Thompson, Mitchell G., Cruz-Morales, Pablo, Moore, William M., Pearson, Allison N., Keasling, Jay D., Scheller, Henrik V., Shih, Patrick M.
Publicado 2020

Actinobacteria phylogenomics, selective isolation from an iron oligotrophic environment and siderophore functional characterization, unveil new desferrioxamine traits

por Cruz-Morales, Pablo, Ramos-Aboites, Hilda E., Licona-Cassani, Cuauhtémoc, Selem-Mójica, Nelly, Mejía-Ponce, Paulina M., Souza-Saldívar, Valeria, Barona-Gómez, Francisco
Publicado 2017

Phylogenomic Analysis of Natural Products Biosynthetic Gene Clusters Allows Discovery of Arseno-Organic Metabolites in Model Streptomycetes

por Cruz-Morales, Pablo, Kopp, Johannes Florian, Martínez-Guerrero, Christian, Yáñez-Guerra, Luis Alfonso, Selem-Mojica, Nelly, Ramos-Aboites, Hilda, Feldmann, Jörg, Barona-Gómez, Francisco
Publicado 2016

The Genome Sequence of Streptomyces lividans 66 Reveals a Novel tRNA-Dependent Peptide Biosynthetic System within a Metal-Related Genomic Island

por Cruz-Morales, Pablo, Vijgenboom, Erik, Iruegas-Bocardo, Fernanda, Girard, Geneviève, Yáñez-Guerra, Luis Alfonso, Ramos-Aboites, Hilda E., Pernodet, Jean-Luc, Anné, Jozef, van Wezel, Gilles P., Barona-Gómez, Francisco
Publicado 2013

Comparative Genomics and Metabolomics Analyses of Clavulanic Acid-Producing Streptomyces Species Provides Insight Into Specialized Metabolism

por AbuSara, Nader F., Piercey, Brandon M., Moore, Marcus A., Shaikh, Arshad Ali, Nothias, Louis-Félix, Srivastava, Santosh K., Cruz-Morales, Pablo, Dorrestein, Pieter C., Barona-Gómez, Francisco, Tahlan, Kapil
Publicado 2019

Cycad Coralloid Roots Contain Bacterial Communities Including Cyanobacteria and Caulobacter spp. That Encode Niche-Specific Biosynthetic Gene Clusters

por Gutiérrez-García, Karina, Bustos-Díaz, Edder D, Corona-Gómez, José Antonio, Ramos-Aboites, Hilda E, Sélem-Mojica, Nelly, Cruz-Morales, Pablo, Pérez-Farrera, Miguel A, Barona-Gómez, Francisco, Cibrián-Jaramillo, Angélica
Publicado 2018

Omics-driven identification and elimination of valerolactam catabolism in Pseudomonas putida KT2440 for increased product titer

por Thompson, Mitchell G., Valencia, Luis E., Blake-Hedges, Jacquelyn M., Cruz-Morales, Pablo, Velasquez, Alexandria E., Pearson, Allison N., Sermeno, Lauren N., Sharpless, William A., Benites, Veronica T., Chen, Yan, Baidoo, Edward E.K., Petzold, Christopher J., Deutschbauer, Adam M., Keasling, Jay D.
Publicado 2019

Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism

por Thompson, Mitchell G., Blake-Hedges, Jacquelyn M., Cruz-Morales, Pablo, Barajas, Jesus F., Curran, Samuel C., Eiben, Christopher B., Harris, Nicholas C., Benites, Veronica T., Gin, Jennifer W., Sharpless, William A., Twigg, Frederick F., Skyrud, Will, Krishna, Rohith N., Pereira, Jose Henrique, Baidoo, Edward E. K., Petzold, Christopher J., Adams, Paul D., Arkin, Adam P., Deutschbauer, Adam M., Keasling, Jay D.
Publicado 2019

A computational framework to explore large-scale biosynthetic diversity

por Navarro-Muñoz, Jorge C., Selem-Mojica, Nelly, Mullowney, Michael W., Kautsar, Satria A., Tryon, James H., Parkinson, Elizabeth I., De Los Santos, Emmanuel L.C., Yeong, Marley, Cruz-Morales, Pablo, Abubucker, Sahar, Roeters, Arne, Lokhorst, Wouter, Fernandez-Guerra, Antonio, Cappelini, Luciana Teresa Dias, Goering, Anthony W., Thomson, Regan J., Metcalf, William W., Kelleher, Neil L., Barona-Gomez, Francisco, Medema, Marnix H.
Publicado 2019

An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism

por Thompson, Mitchell G., Blake-Hedges, Jacquelyn M., Pereira, Jose Henrique, Hangasky, John A., Belcher, Michael S., Moore, William M., Barajas, Jesus F., Cruz-Morales, Pablo, Washington, Lorenzo J., Haushalter, Robert W., Eiben, Christopher B., Liu, Yuzhong, Skyrud, Will, Benites, Veronica T., Barnum, Tyler P., Baidoo, Edward E. K., Scheller, Henrik V., Marletta, Michael A., Shih, Patrick M., Adams, Paul D., Keasling, Jay D.
Publicado 2020

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

por Terlouw, Barbara R, Blin, Kai, Navarro-Muñoz, Jorge C, Avalon, Nicole E, Chevrette, Marc G, Egbert, Susan, Lee, Sanghoon, Meijer, David, Recchia, Michael J J, Reitz, Zachary L, van Santen, Jeffrey A, Selem-Mojica, Nelly, Tørring, Thomas, Zaroubi, Liana, Alanjary, Mohammad, Aleti, Gajender, Aguilar, César, Al-Salihi, Suhad A A, Augustijn, Hannah E, Avelar-Rivas, J Abraham, Avitia-Domínguez, Luis A, Barona-Gómez, Francisco, Bernaldo-Agüero, Jordan, Bielinski, Vincent A, Biermann, Friederike, Booth, Thomas J, Carrion Bravo, Victor J, Castelo-Branco, Raquel, Chagas, Fernanda O, Cruz-Morales, Pablo, Du, Chao, Duncan, Katherine R, Gavriilidou, Athina, Gayrard, Damien, Gutiérrez-García, Karina, Haslinger, Kristina, Helfrich, Eric J N, van der Hooft, Justin J J, Jati, Afif P, Kalkreuter, Edward, Kalyvas, Nikolaos, Kang, Kyo Bin, Kautsar, Satria, Kim, Wonyong, Kunjapur, Aditya M, Li, Yong-Xin, Lin, Geng-Min, Loureiro, Catarina, Louwen, Joris J R, Louwen, Nico L L, Lund, George, Parra, Jonathan, Philmus, Benjamin, Pourmohsenin, Bita, Pronk, Lotte J U, Rego, Adriana, Rex, Devasahayam Arokia Balaya, Robinson, Serina, Rosas-Becerra, L Rodrigo, Roxborough, Eve T, Schorn, Michelle A, Scobie, Darren J, Singh, Kumar Saurabh, Sokolova, Nika, Tang, Xiaoyu, Udwary, Daniel, Vigneshwari, Aruna, Vind, Kristiina, Vromans, Sophie P J M, Waschulin, Valentin, Williams, Sam E, Winter, Jaclyn M, Witte, Thomas E, Xie, Huali, Yang, Dong, Yu, Jingwei, Zdouc, Mitja, Zhong, Zheng, Collemare, Jérôme, Linington, Roger G, Weber, Tilmann, Medema, Marnix H
Publicado 2022