Vorescore—fold recognition improved by rescoring of protein structure models

por Csaba, Gergely, Zimmer, Ralf
Publicado 2010

Alternative splicing and protein structure evolution

por Birzele, Fabian, Csaba, Gergely, Zimmer, Ralf
Publicado 2008

Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis

por Csaba, Gergely, Birzele, Fabian, Zimmer, Ralf
Publicado 2009

Bioconductor’s EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis

por Geistlinger, Ludwig, Csaba, Gergely, Zimmer, Ralf
Publicado 2016

Evaluating Transcription Factor Activity Changes by Scoring Unexplained Target Genes in Expression Data

por Berchtold, Evi, Csaba, Gergely, Zimmer, Ralf
Publicado 2016

YESdb: integrative analysis of environmental stress in yeast

por Berchtold, Evi, Csaba, Gergely, Zimmer, Ralf
Publicado 2019

miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature

por Naeem, Haroon, Küffner, Robert, Csaba, Gergely, Zimmer, Ralf
Publicado 2010

Alternative Splicing in Next Generation Sequencing Data of Saccharomyces cerevisiae

por Schreiber, Konrad, Csaba, Gergely, Haslbeck, Martin, Zimmer, Ralf
Publicado 2015

A context-based approach to identify the most likely mapping for RNA-seq experiments

por Bonfert, Thomas, Csaba, Gergely, Zimmer, Ralf, Friedel, Caroline C
Publicado 2012

Mining RNA–Seq Data for Infections and Contaminations

por Bonfert, Thomas, Csaba, Gergely, Zimmer, Ralf, Friedel, Caroline C.
Publicado 2013

From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems

por Geistlinger, Ludwig, Csaba, Gergely, Küffner, Robert, Mulder, Nicola, Zimmer, Ralf
Publicado 2011

A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae

por Geistlinger, Ludwig, Csaba, Gergely, Dirmeier, Simon, Küffner, Robert, Zimmer, Ralf
Publicado 2013

ContextMap 2: fast and accurate context-based RNA-seq mapping

por Bonfert, Thomas, Kirner, Evelyn, Csaba, Gergely, Zimmer, Ralf, Friedel, Caroline C
Publicado 2015

miR-103 promotes endothelial maladaptation by targeting lncWDR59

por Natarelli, Lucia, Geißler, Claudia, Csaba, Gergely, Wei, Yuanyuan, Zhu, Mengyu, di Francesco, Andrea, Hartmann, Petra, Zimmer, Ralf, Schober, Andreas
Publicado 2018

A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock

por Sedlar, Karel, Kolek, Jan, Gruber, Markus, Jureckova, Katerina, Branska, Barbora, Csaba, Gergely, Vasylkivska, Maryna, Zimmer, Ralf, Patakova, Petra, Provaznik, Ivo
Publicado 2019

Toward a gold standard for benchmarking gene set enrichment analysis

por Geistlinger, Ludwig, Csaba, Gergely, Santarelli, Mara, Ramos, Marcel, Schiffer, Lucas, Turaga, Nitesh, Law, Charity, Davis, Sean, Carey, Vincent, Morgan, Martin, Zimmer, Ralf, Waldron, Levi
Publicado 2020

Human genetic defects in SRP19 and SRPRA cause severe congenital neutropenia with distinctive proteome changes

por Linder, Monika I., Mizoguchi, Yoko, Hesse, Sebastian, Csaba, Gergely, Tatematsu, Megumi, Łyszkiewicz, Marcin, Ziȩtara, Natalia, Jeske, Tim, Hastreiter, Maximilian, Rohlfs, Meino, Liu, Yanshan, Grabowski, Piotr, Ahomaa, Kaarin, Maier-Begandt, Daniela, Schwestka, Marko, Pazhakh, Vahid, Isiaku, Abdulsalam I., Briones Miranda, Brenda, Blombery, Piers, Saito, Megumu K., Rusha, Ejona, Alizadeh, Zahra, Pourpak, Zahra, Kobayashi, Masao, Rezaei, Nima, Unal, Ekrem, Hauck, Fabian, Drukker, Micha, Walzog, Barbara, Rappsilber, Juri, Zimmer, Ralf, Lieschke, Graham J., Klein, Christoph
Publicado 2023