Probabilistic Mixture Models Improve Calibration of Panel-derived Tumor Mutational Burden in the Context of both Tumor-normal and Tumor-only Sequencing

por Anaya, Jordan, Sidhom, John-William, Cummings, Craig A., Baras, Alexander S.
Publicado 2023

Phase variation and microevolution at homopolymeric tracts in Bordetella pertussis

por Gogol, Emily B, Cummings, Craig A, Burns, Ryan C, Relman, David A
Publicado 2007

Bordetella pertussis, the Causative Agent of Whooping Cough, Evolved from a Distinct, Human-Associated Lineage of B. bronchiseptica

por Diavatopoulos, Dimitri A, Cummings, Craig A, Schouls, Leo M, Brinig, Mary M, Relman, David A, Mooi, Frits R
Publicado 2005

Genomic characterization of Salmonella Cerro ST367, an emerging Salmonella subtype in cattle in the United States

por Rodriguez-Rivera, Lorraine D, Moreno Switt, Andrea I, Degoricija, Lovorka, Fang, Rixun, Cummings, Craig A, Furtado, Manohar R, Wiedmann, Martin, den Bakker, Henk C
Publicado 2014

Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss

por den Bakker, Henk C, Cummings, Craig A, Ferreira, Vania, Vatta, Paolo, Orsi, Renato H, Degoricija, Lovorka, Barker, Melissa, Petrauskene, Olga, Furtado, Manohar R, Wiedmann, Martin
Publicado 2010

Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica

por den Bakker, Henk C, Moreno Switt, Andrea I, Govoni, Gregory, Cummings, Craig A, Ranieri, Matthew L, Degoricija, Lovorka, Hoelzer, Karin, Rodriguez-Rivera, Lorraine D, Brown, Stephanie, Bolchacova, Elena, Furtado, Manohar R, Wiedmann, Martin
Publicado 2011

Identification and Characterization of Novel Salmonella Mobile Elements Involved in the Dissemination of Genes Linked to Virulence and Transmission

por Moreno Switt, Andrea I., den Bakker, Henk C., Cummings, Craig A., Rodriguez-Rivera, Lorraine D., Govoni, Gregory, Raneiri, Matthew L., Degoricija, Lovorka, Brown, Stephanie, Hoelzer, Karin, Peters, Joseph E., Bolchacova, Elena, Furtado, Manohar R., Wiedmann, Martin
Publicado 2012

Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing

por Cummings, Craig A, Bormann Chung, Christina A, Fang, Rixun, Barker, Melissa, Brzoska, Pius, Williamson, Phillip C, Beaudry, Jodi, Matthews, Molly, Schupp, James, Wagner, David M, Birdsell, Dawn, Vogler, Amy J, Furtado, Manohar R, Keim, Paul, Budowle, Bruce
Publicado 2010

Comparative Analysis of Genome Sequences Covering the Seven Cronobacter Species

por Joseph, Susan, Desai, Prerak, Ji, Yongmei, Cummings, Craig A., Shih, Rita, Degoricija, Lovorka, Rico, Alain, Brzoska, Pius, Hamby, Stephen E., Masood, Naqash, Hariri, Sumyya, Sonbol, Hana, Chuzhanova, Nadia, McClelland, Michael, Furtado, Manohar R., Forsythe, Stephen J.
Publicado 2012

Molecular Characterization of the Predominant Influenza A(H1N1)pdm09 Virus in Mexico, December 2011–February 2012

por de la Rosa-Zamboni, Daniela, Vázquez-Pérez, Joel A., Ávila-Ríos, Santiago, Carranco-Arenas, Ana Paola, Ormsby, Christopher E., Cummings, Craig A., Soto-Nava, Maribel, Hernández-Hernández, Víctor A., Orozco-Sánchez, Carmen O., la Barrera, Claudia Alvarado-de, Pérez-Padilla, Rogelio, Reyes-Terán, Gustavo
Publicado 2012

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus

por Driebe, Elizabeth M., Sahl, Jason W., Roe, Chandler, Bowers, Jolene R., Schupp, James M., Gillece, John D., Kelley, Erin, Price, Lance B., Pearson, Talima R., Hepp, Crystal M., Brzoska, Pius M., Cummings, Craig A., Furtado, Manohar R., Andersen, Paal S., Stegger, Marc, Engelthaler, David M., Keim, Paul S.
Publicado 2015

Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology

por Mellmann, Alexander, Harmsen, Dag, Cummings, Craig A., Zentz, Emily B., Leopold, Shana R., Rico, Alain, Prior, Karola, Szczepanowski, Rafael, Ji, Yongmei, Zhang, Wenlan, McLaughlin, Stephen F., Henkhaus, John K., Leopold, Benjamin, Bielaszewska, Martina, Prager, Rita, Brzoska, Pius M., Moore, Richard L., Guenther, Simone, Rothberg, Jonathan M., Karch, Helge
Publicado 2011