Simple statistical models predict C-to-U edited sites in plant mitochondrial RNA

por Cummings, Michael P, Myers, Daniel S
Publicado 2004

A comparative evaluation of sequence classification programs

por Bazinet, Adam L, Cummings, Michael P
Publicado 2012

Section-level relationships of North American Agalinis (Orobanchaceae) based on DNA sequence analysis of three chloroplast gene regions

por Neel, Maile C, Cummings, Michael P
Publicado 2004

Few amino acid positions in rpoB are associated with most of the rifampin resistance in Mycobacterium tuberculosis

por Cummings, Michael P, Segal, Mark R
Publicado 2004

A Gateway for Phylogenetic Analysis Powered by Grid Computing Featuring GARLI 2.0

por Bazinet, Adam L., Zwickl, Derrick J., Cummings, Michael P.
Publicado 2014

Can RNA-Seq Resolve the Rapid Radiation of Advanced Moths and Butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An Exploratory Study

por Bazinet, Adam L., Cummings, Michael P., Mitter, Kim T., Mitter, Charles W.
Publicado 2013

Relationships within Cladobranchia (Gastropoda: Nudibranchia) based on RNA-Seq data: an initial investigation

por Goodheart, Jessica A., Bazinet, Adam L., Collins, Allen G., Cummings, Michael P.
Publicado 2015

A phylogenomic approach to resolving interrelationships of polyclad flatworms, with implications for life-history evolution

por Goodheart, Jessica A., Collins, Allen G., Cummings, Michael P., Egger, Bernhard, Rawlinson, Kate A.
Publicado 2023

Prey preference follows phylogeny: evolutionary dietary patterns within the marine gastropod group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia)

por Goodheart, Jessica A., Bazinet, Adam L., Valdés, Ángel, Collins, Allen G., Cummings, Michael P.
Publicado 2017

A Molecular Phylogeny for the Leaf-Roller Moths (Lepidoptera: Tortricidae) and Its Implications for Classification and Life History Evolution

por Regier, Jerome C., Brown, John W., Mitter, Charles, Baixeras, Joaquín, Cho, Soowon, Cummings, Michael P., Zwick, Andreas
Publicado 2012

Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads

por Huson, Daniel H., Tappu, Rewati, Bazinet, Adam L, Xie, Chao, Cummings, Michael P., Nieselt, Kay, Williams, Rohan
Publicado 2017

A Molecular Phylogeny for Yponomeutoidea (Insecta, Lepidoptera, Ditrysia) and Its Implications for Classification, Biogeography and the Evolution of Host Plant Use

por Sohn, Jae-Cheon, Regier, Jerome C., Mitter, Charles, Davis, Donald, Landry, Jean-François, Zwick, Andreas, Cummings, Michael P.
Publicado 2013

A critical assessment of gene catalogs for metagenomic analysis

por Commichaux, Seth, Shah, Nidhi, Ghurye, Jay, Stoppel, Alexander, Goodheart, Jessica A, Luque, Guillermo G, Cummings, Michael P, Pop, Mihai
Publicado 2021

Comparative morphology and evolution of the cnidosac in Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia)

por Goodheart, Jessica A., Bleidißel, Sabrina, Schillo, Dorothee, Strong, Ellen E., Ayres, Daniel L., Preisfeld, Angelika, Collins, Allen G., Cummings, Michael P., Wägele, Heike
Publicado 2018

Increased gene sampling strengthens support for higher-level groups within leaf-mining moths and relatives (Lepidoptera: Gracillariidae)

por Kawahara, Akito Y, Ohshima, Issei, Kawakita, Atsushi, Regier, Jerome C, Mitter, Charles, Cummings, Michael P, Davis, Donald R, Wagner, David L, De Prins, Jurate, Lopez-Vaamonde, Carlos
Publicado 2011

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

por Ayres, Daniel L, Cummings, Michael P, Baele, Guy, Darling, Aaron E, Lewis, Paul O, Swofford, David L, Huelsenbeck, John P, Lemey, Philippe, Rambaut, Andrew, Suchard, Marc A
Publicado 2019

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

por Ayres, Daniel L., Darling, Aaron, Zwickl, Derrick J., Beerli, Peter, Holder, Mark T., Lewis, Paul O., Huelsenbeck, John P., Ronquist, Fredrik, Swofford, David L., Cummings, Michael P., Rambaut, Andrew, Suchard, Marc A.
Publicado 2012

Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)?

por Cho, Soowon, Zwick, Andreas, Regier, Jerome C., Mitter, Charles, Cummings, Michael P., Yao, Jianxiu, Du, Zaile, Zhao, Hong, Kawahara, Akito Y., Weller, Susan, Davis, Donald R., Baixeras, Joaquin, Brown, John W., Parr, Cynthia
Publicado 2011

A Large-Scale, Higher-Level, Molecular Phylogenetic Study of the Insect Order Lepidoptera (Moths and Butterflies)

por Regier, Jerome C., Mitter, Charles, Zwick, Andreas, Bazinet, Adam L., Cummings, Michael P., Kawahara, Akito Y., Sohn, Jae-Cheon, Zwickl, Derrick J., Cho, Soowon, Davis, Donald R., Baixeras, Joaquin, Brown, John, Parr, Cynthia, Weller, Susan, Lees, David C., Mitter, Kim T.
Publicado 2013

Machine learning-driven multifunctional peptide engineering for sustained ocular drug delivery

por Hsueh, Henry T., Chou, Renee Ti, Rai, Usha, Liyanage, Wathsala, Kim, Yoo Chun, Appell, Matthew B., Pejavar, Jahnavi, Leo, Kirby T., Davison, Charlotte, Kolodziejski, Patricia, Mozzer, Ann, Kwon, HyeYoung, Sista, Maanasa, Anders, Nicole M., Hemingway, Avelina, Rompicharla, Sri Vishnu Kiran, Edwards, Malia, Pitha, Ian, Hanes, Justin, Cummings, Michael P., Ensign, Laura M.
Publicado 2023