A Note on Exact Differences between Beta Distributions in Genomic (Methylation) Studies

por Raineri, Emanuele, Dabad, Marc, Heath, Simon
Publicado 2014

cvlr: finding heterogeneously methylated genomic regions using ONT reads

por Raineri, Emanuele, Alberola i Pla, Mariona, Dabad, Marc, Heath, Simon
Publicado 2023

DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data

por Bonet, Jose, Chen, Mandi, Dabad, Marc, Heath, Simon, Gonzalez-Perez, Abel, Lopez-Bigas, Nuria, Lagergren, Jens
Publicado 2021

Deep analysis of acquired resistance to FGFR1 inhibitor identifies MET and AKT activation and an expansion of AKT1 mutant cells

por Gimenez-Xavier, Pol, Pros, Eva, Aza, Ana, Moran, Sebastian, Tonda, Raul, Esteve-Codina, Anna, Dabad, Marc, Sanchez-Cespedes, Montse
Publicado 2018

Developmental RNA-Seq transcriptomics of haploid germ cells and spermatozoa uncovers novel pathways associated with teleost spermiogenesis

por Castro-Arnau, Júlia, Chauvigné, François, Gómez-Garrido, Jessica, Esteve-Codina, Anna, Dabad, Marc, Alioto, Tyler, Finn, Roderick Nigel, Cerdà, Joan
Publicado 2022

Innate Cell-Mediated Cytotoxic Activity of European Sea Bass Leucocytes Against Nodavirus-Infected Cells: A Functional and RNA-seq Study

por Chaves-Pozo, Elena, Valero, Yulema, Esteve-Codina, Anna, Gómez-Garrido, Jèssica, Dabad, Marc, Alioto, Tyler, Meseguer, José, Esteban, M. Ángeles, Cuesta, Alberto
Publicado 2017

Alteration in the Culex pipiens transcriptome reveals diverse mechanisms of the mosquito immune system implicated upon Rift Valley fever phlebovirus exposure

por Núñez, Ana I., Esteve-Codina, Anna, Gómez-Garrido, Jèssica, Brustolin, Marco, Talavera, Sandra, Berdugo, Miguel, Dabad, Marc, Alioto, Tyler, Bensaid, Albert, Busquets, Núria
Publicado 2020

A Stenotrophomonas maltophilia TetR-Like Transcriptional Regulator Involved in Fatty Acid Metabolism Is Controlled by Quorum Sensing Signals

por Coves, Xavier, Bravo, Marc, Huedo, Pol, Conchillo-Solé, Òscar, Gómez, Andromeda-Celeste, Esteve-Codina, Anna, Dabad, Marc, Gut, Marta, Daura, Xavier, Yero, Daniel, Gibert, Isidre
Publicado 2023

Integrated single-base resolution maps of transcriptome, sRNAome and methylome of Tomato yellow leaf curl virus (TYLCV) in tomato

por Piedra-Aguilera, Álvaro, Jiao, Chen, Luna, Ana P., Villanueva, Francisco, Dabad, Marc, Esteve-Codina, Anna, Díaz-Pendón, Juan A., Fei, Zhangjun, Bejarano, Eduardo R., Castillo, Araceli G.
Publicado 2019

De novo transcriptome sequencing and gene co-expression reveal a genomic basis for drought sensitivity and evidence of a rapid local adaptation on Atlas cedar (Cedrus atlantica)

por Cobo-Simón, Irene, Gómez-Garrido, Jèssica, Esteve-Codina, Anna, Dabad, Marc, Alioto, Tyler, Maloof, Julin N., Méndez-Cea, Belén, Seco, José Ignacio, Linares, Juan Carlos, Gallego, Francisco Javier
Publicado 2023

Histone H1 depletion triggers an interferon response in cancer cells via activation of heterochromatic repeats

por Izquierdo-Bouldstridge, Andrea, Bustillos, Alberto, Bonet-Costa, Carles, Aribau-Miralbés, Patricia, García-Gomis, Daniel, Dabad, Marc, Esteve-Codina, Anna, Pascual-Reguant, Laura, Peiró, Sandra, Esteller, Manel, Murtha, Matthew, Millán-Ariño, Lluís, Jordan, Albert
Publicado 2017

Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture

por Hernandez, Inmaculada, Dhiman, Heena, Klanert, Gerald, Jadhav, Vaibhav, Auer, Norbert, Hanscho, Michael, Baumann, Martina, Esteve‐Codina, Anna, Dabad, Marc, Gómez, Jessica, Alioto, Tyler, Merkel, Angelika, Raineri, Emanuele, Heath, Simon, Rico, Daniel, Borth, Nicole
Publicado 2019

A method for multiplexed full-length single-molecule sequencing of the human mitochondrial genome

por Keraite, Ieva, Becker, Philipp, Canevazzi, Davide, Frias-López, Cristina, Dabad, Marc, Tonda-Hernandez, Raúl, Paramonov, Ida, Ingham, Matthew John, Brun-Heath, Isabelle, Leno, Jordi, Abulí, Anna, Garcia-Arumí, Elena, Heath, Simon Charles, Gut, Marta, Gut, Ivo Glynne
Publicado 2022

Demographic History of the Genus Pan Inferred from Whole Mitochondrial Genome Reconstructions

por Lobon, Irene, Tucci, Serena, de Manuel, Marc, Ghirotto, Silvia, Benazzo, Andrea, Prado-Martinez, Javier, Lorente-Galdos, Belen, Nam, Kiwoong, Dabad, Marc, Hernandez-Rodriguez, Jessica, Comas, David, Navarro, Arcadi, Schierup, Mikkel H., Andres, Aida M., Barbujani, Guido, Hvilsom, Christina, Marques-Bonet, Tomas
Publicado 2016

A Comparison of RNA-Seq Results from Paired Formalin-Fixed Paraffin-Embedded and Fresh-Frozen Glioblastoma Tissue Samples

por Esteve-Codina, Anna, Arpi, Oriol, Martinez-García, Maria, Pineda, Estela, Mallo, Mar, Gut, Marta, Carrato, Cristina, Rovira, Anna, Lopez, Raquel, Tortosa, Avelina, Dabad, Marc, Del Barco, Sonia, Heath, Simon, Bagué, Silvia, Ribalta, Teresa, Alameda, Francesc, de la Iglesia, Nuria, Balaña, Carmen
Publicado 2017

Y chromosome sequence and epigenomic reconstruction across human populations

por Esteller-Cucala, Paula, Palmada-Flores, Marc, Kuderna, Lukas F. K., Fontsere, Claudia, Serres-Armero, Aitor, Dabad, Marc, Torralvo, María, Faella, Armida, Ferrández-Peral, Luis, Llovera, Laia, Fornas, Oscar, Julià, Eva, Ramírez, Erika, González, Irene, Hecht, Jochen, Lizano, Esther, Juan, David, Marquès-Bonet, Tomàs
Publicado 2023

Cross-protection against African swine fever virus upon intranasal vaccination is associated with an adaptive-innate immune crosstalk

por Bosch-Camós, Laia, Alonso, Uxía, Esteve-Codina, Anna, Chang, Chia-Yu, Martín-Mur, Beatriz, Accensi, Francesc, Muñoz, Marta, Navas, María J., Dabad, Marc, Vidal, Enric, Pina-Pedrero, Sonia, Pleguezuelos, Patricia, Caratù, Ginevra, Salas, María L., Liu, Lihong, Bataklieva, Stanimira, Gavrilov, Boris, Rodríguez, Fernando, Argilaguet, Jordi
Publicado 2022

In silico validation of RNA-Seq results can identify gene fusions with oncogenic potential in glioblastoma

por Hernandez, Ainhoa, Muñoz-Mármol, Ana Maria, Esteve-Codina, Anna, Alameda, Francesc, Carrato, Cristina, Pineda, Estela, Arpí-Lluciá, Oriol, Martinez-García, Maria, Mallo, Mar, Gut, Marta, del Barco, Sonia, Gallego, Oscar, Dabad, Marc, Mesia, Carlos, Bellosillo, Beatriz, Domenech, Marta, Vidal, Noemí, Aldecoa, Iban, de la Iglesia, Nuria, Balana, Carmen
Publicado 2022

The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild

por Prado-Martinez, Javier, Hernando-Herraez, Irene, Lorente-Galdos, Belen, Dabad, Marc, Ramirez, Oscar, Baeza-Delgado, Carlos, Morcillo-Suarez, Carlos, Alkan, Can, Hormozdiari, Fereydoun, Raineri, Emanuele, Estellé, Jordi, Fernandez-Callejo, Marcos, Valles, Mònica, Ritscher, Lars, Schöneberg, Torsten, de la Calle-Mustienes, Elisa, Casillas, Sònia, Rubio-Acero, Raquel, Melé, Marta, Engelken, Johannes, Caceres, Mario, Gomez-Skarmeta, Jose Luis, Gut, Marta, Bertranpetit, Jaume, Gut, Ivo G, Abello, Teresa, Eichler, Evan E, Mingarro, Ismael, Lalueza-Fox, Carles, Navarro, Arcadi, Marques-Bonet, Tomas
Publicado 2013

Gender specific airway gene expression in COPD sub-phenotypes supports a role of mitochondria and of different types of leukocytes

por Esteve-Codina, Anna, Hofer, Thomas P., Burggraf, Dorothe, Heiss-Neumann, Marion S., Gesierich, Wolfgang, Boland, Anne, Olaso, Robert, Bihoreau, Marie-Therese, Deleuze, Jean-Francois, Moeller, Winfried, Schmid, Otmar, Soler Artigas, María, Renner, Kathrin, Hohlfeld, Jens M., Welte, Tobias, Fuehner, Thomas, Jerrentrup, Lukas, Koczulla, Andreas Rembert, Greulich, Timm, Prasse, Antje, Müller-Quernheim, Joachim, Gupta, Sumit, Brightling, Christopher, Subramanian, Deepak R., Parr, David G., Kolsum, Umme, Gupta, Vandana, Barta, Imre, Döme, Balázs, Strausz, János, Stendardo, Mariarita, Piattella, Marco, Boschetto, Piera, Korzybski, Damian, Gorecka, Dorota, Nowinski, Adam, Dabad, Marc, Fernández-Callejo, Marcos, Endesfelder, David, zu Castell, Wolfgang, Hiemstra, Pieter S., Venge, Per, Noessner, Elfriede, Griebel, Thasso, Heath, Simon, Singh, Dave, Gut, Ivo, Ziegler-Heitbrock, Loems
Publicado 2021