Protein post-translational modifications: In silico prediction tools and molecular modeling

por Audagnotto, Martina, Dal Peraro, Matteo
Publicado 2017

Assessing the potential of atomistic molecular dynamics simulations to probe reversible protein-protein recognition and binding

por Abriata, Luciano A., Dal Peraro, Matteo
Publicado 2015

Assessment of transferable forcefields for protein simulations attests improved description of disordered states and secondary structure propensities, and hints at multi-protein sy...

por Abriata, Luciano A., Dal Peraro, Matteo
Publicado 2021

How Structural and Physicochemical Determinants Shape Sequence Constraints in a Functional Enzyme

por Abriata, Luciano A., Palzkill, Timothy, Dal Peraro, Matteo
Publicado 2015

Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server

por Abriata, Luciano A., Bovigny, Christophe, Dal Peraro, Matteo
Publicado 2016

Biological nanopores for single-molecule sensing

por Mayer, Simon Finn, Cao, Chan, Dal Peraro, Matteo
Publicado 2022

TAL Effectors Specificity Stems from Negative Discrimination

por Wicky, Basile I. M., Stenta, Marco, Dal Peraro, Matteo
Publicado 2013

Perturbations of the Straight Transmembrane α-Helical Structure of the Amyloid Precursor Protein Affect Its Processing by γ-Secretase

por Lemmin, Thomas, Dimitrov, Mitko, Fraering, Patrick C., Dal Peraro, Matteo
Publicado 2014

Cooperative motion of a key positively charged residue and metal ions for DNA replication catalyzed by human DNA Polymerase-η

por Genna, Vito, Gaspari, Roberto, Dal Peraro, Matteo, De Vivo, Marco
Publicado 2016

PeSTo: parameter-free geometric deep learning for accurate prediction of protein binding interfaces

por Krapp, Lucien F., Abriata, Luciano A., Cortés Rodriguez, Fabio, Dal Peraro, Matteo
Publicado 2023

Assembly of the Transmembrane Domain of E. coli PhoQ Histidine Kinase: Implications for Signal Transduction from Molecular Simulations

por Lemmin, Thomas, Soto, Cinque S., Clinthorne, Graham, DeGrado, William F., Dal Peraro, Matteo
Publicado 2013

Disentangling constraints using viability evolution principles in integrative modeling of macromolecular assemblies

por Tamò, Giorgio, Maesani, Andrea, Träger, Sylvain, Degiacomi, Matteo T., Floreano, Dario, Dal Peraro, Matteo
Publicado 2017

Structural, physicochemical and dynamic features conserved within the aerolysin pore-forming toxin family

por Cirauqui, Nuria, Abriata, Luciano A., van der Goot, F. Gisou, Dal Peraro, Matteo
Publicado 2017

CLoNe: automated clustering based on local density neighborhoods for application to biomolecular structural ensembles

por Träger, Sylvain, Tamò, Giorgio, Aydin, Deniz, Fonti, Giulia, Audagnotto, Martina, Dal Peraro, Matteo
Publicado 2020

An experiment-informed signal transduction model for the role of the Staphylococcus aureus MecR1 protein in β-lactam resistance

por Belluzo, Bruno S., Abriata, Luciano A., Giannini, Estefanía, Mihovilcevic, Damila, Dal Peraro, Matteo, Llarrull, Leticia I.
Publicado 2019

Editorial: Multiscale Modeling From Macromolecules to Cell: Opportunities and Challenges of Biomolecular Simulations

por Palermo, Giulia, Bonvin, Alexandre M. J. J., Dal Peraro, Matteo, Amaro, Rommie E., Tozzini, Valentina
Publicado 2020

Peptide-Based Vaccinology: Experimental and Computational Approaches to Target Hypervariable Viruses through the Fine Characterization of Protective Epitopes Recognized by Monoclon...

por Castelli, Matteo, Cappelletti, Francesca, Diotti, Roberta Antonia, Sautto, Giuseppe, Criscuolo, Elena, Dal Peraro, Matteo, Clementi, Nicola
Publicado 2013

Single-molecule sensing of peptides and nucleic acids by engineered aerolysin nanopores

por Cao, Chan, Cirauqui, Nuria, Marcaida, Maria Jose, Buglakova, Elena, Duperrex, Alice, Radenovic, Aleksandra, Dal Peraro, Matteo
Publicado 2019

Cryo-EM structure of aerolysin variants reveals a novel protein fold and the pore-formation process

por Iacovache, Ioan, De Carlo, Sacha, Cirauqui, Nuria, Dal Peraro, Matteo, van der Goot, F. Gisou, Zuber, Benoît
Publicado 2016

Dual Chaperone Role of the C-Terminal Propeptide in Folding and Oligomerization of the Pore-Forming Toxin Aerolysin

por Iacovache, Ioan, Degiacomi, Matteo T., Pernot, Lucile, Ho, Sylvia, Schiltz, Marc, Dal Peraro, Matteo, van der Goot, F. Gisou
Publicado 2011