Impact of whole genome sequencing on the investigation of food-borne outbreaks of Shiga toxin-producing Escherichia coli serogroup O157:H7, England, 2013 to 2017

por Jenkins, Claire, Dallman, Timothy J, Grant, Kathie A
Publicado 2019

A Shiga Toxin-Encoding Prophage Recombination Event Confounds the Phylogenetic Relationship Between Two Isolates of Escherichia coli O157:H7 From the Same Patient

por Greig, David R., Jenkins, Claire, Dallman, Timothy J.
Publicado 2020

An outbreak of a rare Shiga-toxin-producing Escherichia coli serotype (O117:H7) among men who have sex with men

por Baker, Kate S., Dallman, Timothy J., Thomson, Nicholas R., Jenkins, Claire
Publicado 2018

Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli

por Greig, David R, Jenkins, Claire, Gharbia, Saheer, Dallman, Timothy J
Publicado 2019

MinION nanopore sequencing identifies the position and structure of bacterial antibiotic resistance determinants in a multidrug-resistant strain of enteroaggregative Escherichia co...

por Greig, David R., Dallman, Timothy J., Hopkins, Katie L., Jenkins, Claire
Publicado 2018

Phage Predation Shapes the Population Structure of Shiga-Toxigenic Escherichia coli O157:H7 in the UK: An Evolutionary Perspective

por Cowley, Lauren A., Dallman, Timothy J., Jenkins, Claire, Sheppard, Samuel K.
Publicado 2019

Phylogenetic structure of Shiga toxin-producing Escherichia coli O157:H7 from sub-lineage to SNPs

por Dallman, Timothy J., Greig, David R., Gharbia, Saheer E., Jenkins, Claire
Publicado 2021

Analysis of a small outbreak of Shiga toxin-producing Escherichia coli O157:H7 using long-read sequencing

por Greig, David R., Jenkins, Claire, Gharbia, Saheer E., Dallman, Timothy J.
Publicado 2021

Phylogenetic context of Shiga toxin-producing Escherichia coli serotype O26:H11 in England

por Dallman, Timothy J., Greig, David R., Gharbia, Saheer E., Jenkins, Claire
Publicado 2021

A case report of Salmonella enterica serovar Corvallis from environmental isolates from Cambodia and clinical isolates in the UK

por Schwan, Carla L., Dallman, Timothy J., Cook, Peter W., Vipham, Jessie
Publicado 2022

Analysis Shiga Toxin-Encoding Bacteriophage in a Rare Strain of Shiga Toxin-Producing Escherichia coli O157:H7 stx2a/stx2c

por Greig, David R., Mikhail, Amy F. W., Dallman, Timothy J., Jenkins, Claire
Publicado 2020

FLORA: A Novel Method to Predict Protein Function from Structure in Diverse Superfamilies

por Redfern, Oliver C., Dessailly, Benoît H., Dallman, Timothy J., Sillitoe, Ian, Orengo, Christine A.
Publicado 2009

Comparison of Shiga toxin-encoding bacteriophages in highly pathogenic strains of Shiga toxin-producing Escherichia coli O157:H7 in the UK

por Yara, Daniel A., Greig, David R., Gally, David L., Dallman, Timothy J., Jenkins, Claire
Publicado 2020

Emergence of novel strains of Shigella flexneri associated with sexual transmission in adult men in England, 2019–2020

por Dallman, Timothy J, Charles, Hannah, Prochazka, Mateo, Sinka, Katy, Hughes, Gwenda, Godbole, Gauri, Jenkins, Claire
Publicado 2021

Whole-Genome Sequencing for National Surveillance of Shigella flexneri

por Chattaway, Marie A., Greig, David R., Gentle, Amy, Hartman, Hassan B., Dallman, Timothy J., Jenkins, Claire
Publicado 2017

Highly Pathogenic Clone of Shiga Toxin–Producing Escherichia coli O157:H7, England and Wales

por Byrne, Lisa, Dallman, Timothy J., Adams, Natalie, Mikhail, Amy F.W., McCarthy, Noel, Jenkins, Claire
Publicado 2018

Genomic surveillance detects Salmonella enterica serovar Paratyphi A harbouring bla(CTX-M-15) from a traveller returning from Bangladesh

por Nair, Satheesh, Day, Martin, Godbole, Gauri, Saluja, Tranprit, Langridge, Gemma C., Dallman, Timothy J., Chattaway, Marie
Publicado 2020

Rapid geographical source attribution of Salmonella enterica serovar Enteritidis genomes using hierarchical machine learning

por Bayliss, Sion C, Locke, Rebecca K, Jenkins, Claire, Chattaway, Marie Anne, Dallman, Timothy J, Cowley, Lauren A
Publicado 2023

Utility of Whole-Genome Sequencing of Escherichia coli O157 for Outbreak Detection and Epidemiological Surveillance

por Holmes, Anne, Allison, Lesley, Ward, Melissa, Dallman, Timothy J., Clark, Richard, Fawkes, Angie, Murphy, Lee, Hanson, Mary
Publicado 2015

Farm-to-fork investigation of an outbreak of Shiga toxin-producing Escherichia coli O157

por Wilson, Deborah, Dolan, Gayle, Aird, Heather, Sorrell, Shirley, Dallman, Timothy J., Jenkins, Claire, Robertson, Lucy, Gorton, Russell
Publicado 2018