Bidirectional Best Hits Miss Many Orthologs in Duplication-Rich Clades such as Plants and Animals

por Dalquen, Daniel A., Dessimoz, Christophe
Publicado 2013

Coalescent Analysis of Phylogenomic Data Confidently Resolves the Species Relationships in the Anopheles gambiae Species Complex

por Thawornwattana, Yuttapong, Dalquen, Daniel, Yang, Ziheng
Publicado 2018

ALF—A Simulation Framework for Genome Evolution

por Dalquen, Daniel A., Anisimova, Maria, Gonnet, Gaston H., Dessimoz, Christophe
Publicado 2012

Gene copy number variation and its significance in cyanobacterial phylogeny

por Schirrmeister, Bettina E, Dalquen, Daniel A, Anisimova, Maria, Bagheri, Homayoun C
Publicado 2012

The Impact of Gene Duplication, Insertion, Deletion, Lateral Gene Transfer and Sequencing Error on Orthology Inference: A Simulation Study

por Dalquen, Daniel A., Altenhoff, Adrian M., Gonnet, Gaston H., Dessimoz, Christophe
Publicado 2013

OMA standalone: orthology inference among public and custom genomes and transcriptomes

por Altenhoff, Adrian M., Levy, Jeremy, Zarowiecki, Magdalena, Tomiczek, Bartłomiej, Warwick Vesztrocy, Alex, Dalquen, Daniel A., Müller, Steven, Telford, Maximilian J., Glover, Natasha M., Dylus, David, Dessimoz, Christophe
Publicado 2019

Standardized benchmarking in the quest for orthologs

por Altenhoff, Adrian M, Boeckmann, Brigitte, Capella-Gutierrez, Salvador, Dalquen, Daniel A, DeLuca, Todd, Forslund, Kristoffer, Huerta-Cepas, Jaime, Linard, Benjamin, Pereira, Cécile, Pryszcz, Leszek P, Schreiber, Fabian, da Silva, Alan Sousa, Szklarczyk, Damian, Train, Clément-Marie, Bork, Peer, Lecompte, Odile, von Mering, Christian, Xenarios, Ioannis, Sjölander, Kimmen, Jensen, Lars Juhl, Martin, Maria J, Muffato, Matthieu, Gabaldón, Toni, Lewis, Suzanna E, Thomas, Paul D, Sonnhammer, Erik, Dessimoz, Christophe
Publicado 2016