MitoBreak: the mitochondrial DNA breakpoints database

por Damas, Joana, Carneiro, João, Amorim, António, Pereira, Filipe
Publicado 2014

syntenyPlotteR: a user-friendly R package to visualize genome synteny, ideal for both experienced and novice bioinformaticians

por Quigley, Sarah, Damas, Joana, Larkin, Denis M, Farré, Marta
Publicado 2023

Conservation of chromatin conformation in carnivores

por Corbo, Marco, Damas, Joana, Bursell, Madeline G., Lewin, Harris A.
Publicado 2022

Reconstruction of avian ancestral karyotypes reveals differences in the evolutionary history of macro- and microchromosomes

por Damas, Joana, Kim, Jaebum, Farré, Marta, Griffin, Darren K, Larkin, Denis M
Publicado 2018

Mitochondrial DNA deletions are associated with non-B DNA conformations

por Damas, Joana, Carneiro, João, Gonçalves, Joana, Stewart, James B., Samuels, David C., Amorim, António, Pereira, Filipe
Publicado 2012

Digital PCR methods improve detection sensitivity and measurement precision of low abundance mtDNA deletions

por Belmonte, Frances R., Martin, James L., Frescura, Kristin, Damas, Joana, Pereira, Filipe, Tarnopolsky, Mark A., Kaufman, Brett A.
Publicado 2016

Chromosome Segregation Is Biased by Kinetochore Size

por Drpic, Danica, Almeida, Ana C., Aguiar, Paulo, Renda, Fioranna, Damas, Joana, Lewin, Harris A., Larkin, Denis M., Khodjakov, Alexey, Maiato, Helder
Publicado 2018

Association of G-quadruplex forming sequences with human mtDNA deletion breakpoints

por Dong, Dawei W, Pereira, Filipe, Barrett, Steven P, Kolesar, Jill E, Cao, Kajia, Damas, Joana, Yatsunyk, Liliya A, Johnson, F Brad, Kaufman, Brett A
Publicado 2014

Novel Insights into Chromosome Evolution in Birds, Archosaurs, and Reptiles

por Farré, Marta, Narayan, Jitendra, Slavov, Gancho T., Damas, Joana, Auvil, Loretta, Li, Cai, Jarvis, Erich D., Burt, David W., Griffin, Darren K., Larkin, Denis M.
Publicado 2016

A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert

por Farré, Marta, Li, Qiye, Zhou, Yang, Damas, Joana, Chemnick, Leona G, Kim, Jaebum, Ryder, Oliver A, Ma, Jian, Zhang, Guojie, Larkin, Denis M, Lewin, Harris A
Publicado 2019

Chromosome-level assembly reveals extensive rearrangement in saker falcon and budgerigar, but not ostrich, genomes

por O’Connor, Rebecca E, Farré, Marta, Joseph, Sunitha, Damas, Joana, Kiazim, Lucas, Jennings, Rebecca, Bennett, Sophie, Slack, Eden A, Allanson, Emily, Larkin, Denis M, Griffin, Darren K
Publicado 2018

Augmin-dependent microtubule self-organization drives kinetochore fiber maturation in mammals

por Almeida, Ana C., Soares-de-Oliveira, Joana, Drpic, Danica, Cheeseman, Liam P., Damas, Joana, Lewin, Harris A., Larkin, Denis M., Aguiar, Paulo, Pereira, António J., Maiato, Helder
Publicado 2022

Upgrading short-read animal genome assemblies to chromosome level using comparative genomics and a universal probe set

por Damas, Joana, O'Connor, Rebecca, Farré, Marta, Lenis, Vasileios Panagiotis E., Martell, Henry J., Mandawala, Anjali, Fowler, Katie, Joseph, Sunitha, Swain, Martin T., Griffin, Darren K., Larkin, Denis M.
Publicado 2017

Reconstruction of the diapsid ancestral genome permits chromosome evolution tracing in avian and non-avian dinosaurs

por O’Connor, Rebecca E., Romanov, Michael N., Kiazim, Lucas G., Barrett, Paul M., Farré, Marta, Damas, Joana, Ferguson-Smith, Malcolm, Valenzuela, Nicole, Larkin, Denis M., Griffin, Darren K.
Publicado 2018

An integrated chromosome-scale genome assembly of the Masai giraffe (Giraffa camelopardalis tippelskirchi)

por Farré, Marta, Li, Qiye, Darolti, Iulia, Zhou, Yang, Damas, Joana, Proskuryakova, Anastasia A, Kulemzina, Anastasia I, Chemnick, Leona G, Kim, Jaebum, Ryder, Oliver A, Ma, Jian, Graphodatsky, Alexander S, Zhang, Guoije, Larkin, Denis M, Lewin, Harris A
Publicado 2019

Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates

por Damas, Joana, Hughes, Graham M., Keough, Kathleen C., Painter, Corrie A., Persky, Nicole S., Corbo, Marco, Hiller, Michael, Koepfli, Klaus-Peter, Pfenning, Andreas R., Zhao, Huabin, Genereux, Diane P., Swofford, Ross, Pollard, Katherine S., Ryder, Oliver A., Nweeia, Martin T., Lindblad-Toh, Kerstin, Teeling, Emma C., Karlsson, Elinor K., Lewin, Harris A.
Publicado 2020

Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates

por Damas, Joana, Hughes, Graham M., Keough, Kathleen C., Painter, Corrie A., Persky, Nicole S., Corbo, Marco, Hiller, Michael, Koepfli, Klaus-Peter, Pfenning, Andreas R., Zhao, Huabin, Genereux, Diane P., Swofford, Ross, Pollard, Katherine S., Ryder, Oliver A., Nweeia, Martin T., Lindblad-Toh, Kerstin, Teeling, Emma C., Karlsson, Elinor K., Lewin, Harris A.
Publicado 2020

Splice-Break: exploiting an RNA-seq splice junction algorithm to discover mitochondrial DNA deletion breakpoints and analyses of psychiatric disorders

por Hjelm, Brooke E, Rollins, Brandi, Morgan, Ling, Sequeira, Adolfo, Mamdani, Firoza, Pereira, Filipe, Damas, Joana, Webb, Michelle G, Weber, Matthieu D, Schatzberg, Alan F, Barchas, Jack D, Lee, Francis S, Akil, Huda, Watson, Stanley J, Myers, Richard M, Chao, Elizabeth C, Kimonis, Virginia, Thompson, Peter M, Bunney, William E, Vawter, Marquis P
Publicado 2019

An atlas of regulatory elements in chicken: A resource for chicken genetics and genomics

por Pan, Zhangyuan, Wang, Ying, Wang, Mingshan, Wang, Yuzhe, Zhu, Xiaoning, Gu, Shenwen, Zhong, Conghao, An, Liqi, Shan, Mingzhu, Damas, Joana, Halstead, Michelle M., Guan, Dailu, Trakooljul, Nares, Wimmers, Klaus, Bi, Ye, Wu, Shang, Delany, Mary E., Bai, Xuechen, Cheng, Hans H., Sun, Congjiao, Yang, Ning, Hu, Xiaoxiang, Lewin, Harris A., Fang, Lingzhao, Zhou, Huaijun
Publicado 2023

Evolution of the ancestral mammalian karyotype and syntenic regions

por Damas, Joana, Corbo, Marco, Kim, Jaebum, Turner-Maier, Jason, Farré, Marta, Larkin, Denis M., Ryder, Oliver A., Steiner, Cynthia, Houck, Marlys L., Hall, Shaune, Shiue, Lily, Thomas, Stephen, Swale, Thomas, Daly, Mark, Korlach, Jonas, Uliano-Silva, Marcela, Mazzoni, Camila J., Birren, Bruce W., Genereux, Diane P., Johnson, Jeremy, Lindblad-Toh, Kerstin, Karlsson, Elinor K., Nweeia, Martin T., Johnson, Rebecca N., Lewin, Harris A.
Publicado 2022