SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins

por Dana, Jose M, Gutmanas, Aleksandras, Tyagi, Nidhi, Qi, Guoying, O’Donovan, Claire, Martin, Maria, Velankar, Sameer
Publicado 2019

PDBeCIF: an open-source mmCIF/CIF parsing and processing package

por van Ginkel, Glen, Pravda, Lukáš, Dana, José M., Varadi, Mihaly, Keller, Peter, Anyango, Stephen, Velankar, Sameer
Publicado 2021

SIFTS: Structure Integration with Function, Taxonomy and Sequences resource

por Velankar, Sameer, Dana, José M., Jacobsen, Julius, van Ginkel, Glen, Gane, Paul J., Luo, Jie, Oldfield, Thomas J., O’Donovan, Claire, Martin, Maria-Jesus, Kleywegt, Gerard J.
Publicado 2013

PDBe: towards reusable data delivery infrastructure at protein data bank in Europe

por Mir, Saqib, Alhroub, Younes, Anyango, Stephen, Armstrong, David R, Berrisford, John M, Clark, Alice R, Conroy, Matthew J, Dana, Jose M, Deshpande, Mandar, Gupta, Deepti, Gutmanas, Aleksandras, Haslam, Pauline, Mak, Lora, Mukhopadhyay, Abhik, Nadzirin, Nurul, Paysan-Lafosse, Typhaine, Sehnal, David, Sen, Sanchayita, Smart, Oliver S, Varadi, Mihaly, Kleywegt, Gerard J, Velankar, Sameer
Publicado 2018

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

por Lewis, Tony E., Sillitoe, Ian, Andreeva, Antonina, Blundell, Tom L., Buchan, Daniel W.A., Chothia, Cyrus, Cuff, Alison, Dana, Jose M., Filippis, Ioannis, Gough, Julian, Hunter, Sarah, Jones, David T., Kelley, Lawrence A., Kleywegt, Gerard J., Minneci, Federico, Mitchell, Alex, Murzin, Alexey G., Ochoa-Montaño, Bernardo, Rackham, Owen J. L., Smith, James, Sternberg, Michael J. E., Velankar, Sameer, Yeats, Corin, Orengo, Christine
Publicado 2013

Genome3D: exploiting structure to help users understand their sequences

por Lewis, Tony E., Sillitoe, Ian, Andreeva, Antonina, Blundell, Tom L., Buchan, Daniel W.A., Chothia, Cyrus, Cozzetto, Domenico, Dana, José M., Filippis, Ioannis, Gough, Julian, Jones, David T., Kelley, Lawrence A., Kleywegt, Gerard J., Minneci, Federico, Mistry, Jaina, Murzin, Alexey G., Ochoa-Montaño, Bernardo, Oates, Matt E., Punta, Marco, Rackham, Owen J.L., Stahlhacke, Jonathan, Sternberg, Michael J.E., Velankar, Sameer, Orengo, Christine
Publicado 2014

PDBe: Protein Data Bank in Europe

por Gutmanas, Aleksandras, Alhroub, Younes, Battle, Gary M., Berrisford, John M., Bochet, Estelle, Conroy, Matthew J., Dana, Jose M., Fernandez Montecelo, Manuel A., van Ginkel, Glen, Gore, Swanand P., Haslam, Pauline, Hatherley, Rowan, Hendrickx, Pieter M.S., Hirshberg, Miriam, Lagerstedt, Ingvar, Mir, Saqib, Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Rinaldi, Luana, Sahni, Gaurav, Sanz-García, Eduardo, Sen, Sanchayita, Slowley, Robert A., Velankar, Sameer, Wainwright, Michael E., Kleywegt, Gerard J.
Publicado 2014

PDBe: improved findability of macromolecular structure data in the PDB

por Armstrong, David R, Berrisford, John M, Conroy, Matthew J, Gutmanas, Aleksandras, Anyango, Stephen, Choudhary, Preeti, Clark, Alice R, Dana, Jose M, Deshpande, Mandar, Dunlop, Roisin, Gane, Paul, Gáborová, Romana, Gupta, Deepti, Haslam, Pauline, Koča, Jaroslav, Mak, Lora, Mir, Saqib, Mukhopadhyay, Abhik, Nadzirin, Nurul, Nair, Sreenath, Paysan-Lafosse, Typhaine, Pravda, Lukas, Sehnal, David, Salih, Osman, Smart, Oliver, Tolchard, James, Varadi, Mihaly, Svobodova-Vařeková, Radka, Zaki, Hossam, Kleywegt, Gerard J, Velankar, Sameer
Publicado 2020

PDBe: Protein Data Bank in Europe

por Velankar, Sameer, Alhroub, Younes, Alili, Anaëlle, Best, Christoph, Boutselakis, Harry C., Caboche, Ségolène, Conroy, Matthew J., Dana, Jose M., van Ginkel, Glen, Golovin, Adel, Gore, Swanand P., Gutmanas, Aleksandras, Haslam, Pauline, Hirshberg, Miriam, John, Melford, Lagerstedt, Ingvar, Mir, Saqib, Newman, Laurence E., Oldfield, Tom J., Penkett, Chris J., Pineda-Castillo, Jorge, Rinaldi, Luana, Sahni, Gaurav, Sawka, Grégoire, Sen, Sanchayita, Slowley, Robert, Sousa da Silva, Alan Wilter, Suarez-Uruena, Antonio, Swaminathan, G. Jawahar, Symmons, Martyn F., Vranken, Wim F., Wainwright, Michael, Kleywegt, Gerard J.
Publicado 2011

PDBe: improved accessibility of macromolecular structure data from PDB and EMDB

por Velankar, Sameer, van Ginkel, Glen, Alhroub, Younes, Battle, Gary M., Berrisford, John M., Conroy, Matthew J., Dana, Jose M., Gore, Swanand P., Gutmanas, Aleksandras, Haslam, Pauline, Hendrickx, Pieter M. S., Lagerstedt, Ingvar, Mir, Saqib, Fernandez Montecelo, Manuel A., Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Sanz-García, Eduardo, Sen, Sanchayita, Slowley, Robert A., Wainwright, Michael E., Deshpande, Mandar S., Iudin, Andrii, Sahni, Gaurav, Salavert Torres, Jose, Hirshberg, Miriam, Mak, Lora, Nadzirin, Nurul, Armstrong, David R., Clark, Alice R., Smart, Oliver S., Korir, Paul K., Kleywegt, Gerard J.
Publicado 2016