Identification of gene co-regulatory modules and associated cis-elements involved in degenerative heart disease

por Danko, Charles G, Pertsov, Arkady M
Publicado 2009

AlleleHMM: a data-driven method to identify allele specific differences in distributed functional genomic marks

por Chou, Shao-Pei, Danko, Charles G
Publicado 2019

groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data

por Chae, Minho, Danko, Charles G., Kraus, W. Lee
Publicado 2015

A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

por Blumberg, Amit, Danko, Charles G., Kundaje, Anshul, Mishmar, Dan
Publicado 2018

Identification of regulatory elements from nascent transcription using dREG

por Wang, Zhong, Chu, Tinyi, Choate, Lauren A., Danko, Charles G.
Publicado 2019

Cell type and gene expression deconvolution with BayesPrism enables Bayesian integrative analysis across bulk and single-cell RNA sequencing in oncology

por Chu, Tinyi, Wang, Zhong, Pe’er, Dana, Danko, Charles G.
Publicado 2022

Bayesian inference of ancient human demography from individual genome sequences

por Gronau, Ilan, Hubisz, Melissa J., Gulko, Brad, Danko, Charles G., Siepel, Adam
Publicado 2011

Enhancer transcripts mark active estrogen receptor binding sites

por Hah, Nasun, Murakami, Shino, Nagari, Anusha, Danko, Charles G., Kraus, W. Lee
Publicado 2013

Dynamic reorganization of the AC16 cardiomyocyte transcriptome in response to TNFα signaling revealed by integrated genomic analyses

por Luo, Xin, Chae, Minho, Krishnakumar, Raga, Danko, Charles G, Kraus, W Lee
Publicado 2014

Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution

por Blumberg, Amit, Rice, Edward J., Kundaje, Anshul, Danko, Charles G., Mishmar, Dan
Publicado 2017

Deconvolution of expression for nascent RNA-sequencing data (DENR) highlights pre-RNA isoform diversity in human cells

por Zhao, Yixin, Dukler, Noah, Barshad, Gilad, Toneyan, Shushan, Danko, Charles G, Siepel, Adam
Publicado 2021

Bioinformatic identification of novel putative photoreceptor specific cis-elements

por Danko, Charles G, McIlvain, Vera A, Qin, Maochun, Knox, Barry E, Pertsov, Arkady M
Publicado 2007

Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers

por Core, Leighton J., Martins, André L., Danko, Charles G., Waters, Colin, Siepel, Adam, Lis, John T.
Publicado 2014

Many functionally connected loci foster adaptive diversification along a neotropical hybrid zone

por Lewis, James J., Van Belleghem, Steven M., Papa, Riccardo, Danko, Charles G., Reed, Robert D.
Publicado 2020

Genetic dissection of the RNA polymerase II transcription cycle

por Chou, Shao-Pei, Alexander, Adriana K, Rice, Edward J, Choate, Lauren A, Danko, Charles G
Publicado 2022

Gene Regulation by CcpA and Catabolite Repression Explored by RNA-Seq in Streptococcus mutans

por Zeng, Lin, Choi, Sang Chul, Danko, Charles G., Siepel, Adam, Stanhope, Michael J., Burne, Robert A.
Publicado 2013

Transcriptional response to stress is pre-wired by promoter and enhancer architecture

por Vihervaara, Anniina, Mahat, Dig Bijay, Guertin, Michael J., Chu, Tinyi, Danko, Charles G., Lis, John T., Sistonen, Lea
Publicado 2017

The Dryas iulia Genome Supports Multiple Gains of a W Chromosome from a B Chromosome in Butterflies

por Lewis, James J, Cicconardi, Francesco, Martin, Simon H, Reed, Robert D, Danko, Charles G, Montgomery, Stephen H
Publicado 2021

Chromosome Fusion Affects Genetic Diversity and Evolutionary Turnover of Functional Loci but Consistently Depends on Chromosome Size

por Cicconardi, Francesco, Lewis, James J, Martin, Simon H, Reed, Robert D, Danko, Charles G, Montgomery, Stephen H
Publicado 2021

GAGA Factor Maintains Nucleosome-Free Regions and Has a Role in RNA Polymerase II Recruitment to Promoters

por Fuda, Nicholas J., Guertin, Michael J., Sharma, Sumeet, Danko, Charles G., Martins, André L., Siepel, Adam, Lis, John T.
Publicado 2015