Allosterism and signal transfer in DNA

por Balaceanu, Alexandra, Pérez, Alberto, Dans, Pablo D, Orozco, Modesto
Publicado 2018

Exploring polymorphisms in B-DNA helical conformations

por Dans, Pablo D., Pérez, Alberto, Faustino, Ignacio, Lavery, Richard, Orozco, Modesto
Publicado 2012

Connecting Proline and γ-Aminobutyric Acid in Stressed Plants through Non-Enzymatic Reactions

por Signorelli, Santiago, Dans, Pablo D., Coitiño, E. Laura, Borsani, Omar, Monza, Jorge
Publicado 2015

How accurate are accurate force-fields for B-DNA?

por Dans, Pablo D., Ivani, Ivan, Hospital, Adam, Portella, Guillem, González, Carlos, Orozco, Modesto
Publicado 2017

Modulation of the helical properties of DNA: next-to-nearest neighbour effects and beyond

por Balaceanu, Alexandra, Buitrago, Diana, Walther, Jürgen, Hospital, Adam, Dans, Pablo D, Orozco, Modesto
Publicado 2019

A multi-modal coarse grained model of DNA flexibility mappable to the atomistic level

por Walther, Jürgen, Dans, Pablo D, Balaceanu, Alexandra, Hospital, Adam, Bayarri, Genís, Orozco, Modesto
Publicado 2020

The structural impact of DNA mismatches

por Rossetti, Giulia, Dans, Pablo D., Gomez-Pinto, Irene, Ivani, Ivan, Gonzalez, Carlos, Orozco, Modesto
Publicado 2015

Molecular basis of Arginine and Lysine DNA sequence-dependent thermo-stability modulation

por Martin, Benjamin, Dans, Pablo D., Wieczór, Milosz, Villegas, Nuria, Brun-Heath, Isabelle, Battistini, Federica, Terrazas, Montserrat, Orozco, Modesto
Publicado 2022

The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function

por Battistini, Federica, Dans, Pablo D., Terrazas, Montserrat, Castellazzi, Chiara L., Portella, Guillem, Labrador, Mireia, Villegas, Núria, Brun-Heath, Isabelle, González, Carlos, Orozco, Modesto
Publicado 2021

BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data

por Hospital, Adam, Andrio, Pau, Cugnasco, Cesare, Codo, Laia, Becerra, Yolanda, Dans, Pablo D., Battistini, Federica, Torres, Jordi, Goñi, Ramón, Orozco, Modesto, Gelpí, Josep Ll.
Publicado 2016

The static and dynamic structural heterogeneities of B-DNA: extending Calladine–Dickerson rules

por Dans, Pablo D, Balaceanu, Alexandra, Pasi, Marco, Patelli, Alessandro S, Petkevičiūtė, Daiva, Walther, Jürgen, Hospital, Adam, Bayarri, Genís, Lavery, Richard, Maddocks, John H, Orozco, Modesto
Publicado 2019

Saturation of recognition elements blocks evolution of new tRNA identities

por Saint-Léger, Adélaïde, Bello, Carla, Dans, Pablo D., Torres, Adrian Gabriel, Novoa, Eva Maria, Camacho, Noelia, Orozco, Modesto, Kondrashov, Fyodor A., Ribas de Pouplana, Lluís
Publicado 2016

Long-timescale dynamics of the Drew–Dickerson dodecamer

por Dans, Pablo D., Danilāne, Linda, Ivani, Ivan, Dršata, Tomáš, Lankaš, Filip, Hospital, Adam, Walther, Jürgen, Pujagut, Ricard Illa, Battistini, Federica, Gelpí, Josep Lluis, Lavery, Richard, Orozco, Modesto
Publicado 2016

Impact of DNA methylation on 3D genome structure

por Buitrago, Diana, Labrador, Mireia, Arcon, Juan Pablo, Lema, Rafael, Flores, Oscar, Esteve-Codina, Anna, Blanc, Julie, Villegas, Nuria, Bellido, David, Gut, Marta, Dans, Pablo D., Heath, Simon C., Gut, Ivo G., Brun Heath, Isabelle, Orozco, Modesto
Publicado 2021

μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA

por Pasi, Marco, Maddocks, John H., Beveridge, David, Bishop, Thomas C., Case, David A., Cheatham, Thomas, Dans, Pablo D., Jayaram, B., Lankas, Filip, Laughton, Charles, Mitchell, Jonathan, Osman, Roman, Orozco, Modesto, Pérez, Alberto, Petkevičiūtė, Daiva, Spackova, Nada, Sponer, Jiri, Zakrzewska, Krystyna, Lavery, Richard
Publicado 2014

PARMBSC1: A REFINED FORCE-FIELD FOR DNA SIMULATIONS

por Ivani, Ivan, Dans, Pablo D., Noy, Agnes, Pérez, Alberto, Faustino, Ignacio, Hospital, Adam, Walther, Jürgen, Andrio, Pau, Goñi, Ramon, Balaceanu, Alexandra, Portella, Guillem, Battistini, Federica, Gelpí, Josep Lluis, González, Carlos, Vendruscolo, Michele, Laughton, Charles A., Harris, Sarah A., Case, David A., Orozco, Modesto
Publicado 2015

A Fijivirus Major Viroplasm Protein Shows RNA-Stimulated ATPase Activity by Adopting Pentameric and Hexameric Assemblies of Dimers

por Llauger, Gabriela, Melero, Roberto, Monti, Demián, Sycz, Gabriela, Huck-Iriart, Cristián, Cerutti, María L., Klinke, Sebastián, Mikkelsen, Evelyn, Tijman, Ariel, Arranz, Rocío, Alfonso, Victoria, Arellano, Sofía M., Goldbaum, Fernando A., Sterckx, Yann G. J., Carazo, José-María, Kaufman, Sergio B., Dans, Pablo D., del Vas, Mariana, Otero, Lisandro H.
Publicado 2023

Histone H3 serine-57 is a CHK1 substrate whose phosphorylation affects DNA repair

por Parisis, Nikolaos, Dans, Pablo D., Jbara, Muhammad, Singh, Balveer, Schausi-Tiffoche, Diane, Molina-Serrano, Diego, Brun-Heath, Isabelle, Hendrychová, Denisa, Maity, Suman Kumar, Buitrago, Diana, Lema, Rafael, Nait Achour, Thiziri, Giunta, Simona, Girardot, Michael, Talarek, Nicolas, Rofidal, Valérie, Danezi, Katerina, Coudreuse, Damien, Prioleau, Marie-Noëlle, Feil, Robert, Orozco, Modesto, Brik, Ashraf, Wu, Pei-Yun Jenny, Krasinska, Liliana, Fisher, Daniel
Publicado 2023

Epigenetic loss of RNA-methyltransferase NSUN5 in glioma targets ribosomes to drive a stress adaptive translational program

por Janin, Maxime, Ortiz-Barahona, Vanessa, de Moura, Manuel Castro, Martínez-Cardús, Anna, Llinàs-Arias, Pere, Soler, Marta, Nachmani, Daphna, Pelletier, Joffrey, Schumann, Ulrike, Calleja-Cervantes, Maria E., Moran, Sebastian, Guil, Sonia, Bueno-Costa, Alberto, Piñeyro, David, Perez-Salvia, Montserrat, Rosselló-Tortella, Margalida, Piqué, Laia, Bech-Serra, Joan J., De La Torre, Carolina, Vidal, August, Martínez-Iniesta, María, Martín-Tejera, Juan F., Villanueva, Alberto, Arias, Alexandra, Cuartas, Isabel, Aransay, Ana M., La Madrid, Andres Morales, Carcaboso, Angel M., Santa-Maria, Vicente, Mora, Jaume, Fernandez, Agustin F., Fraga, Mario F., Aldecoa, Iban, Pedrosa, Leire, Graus, Francesc, Vidal, Noemi, Martínez-Soler, Fina, Tortosa, Avelina, Carrato, Cristina, Balañá, Carme, Boudreau, Matthew W., Hergenrother, Paul J., Kötter, Peter, Entian, Karl-Dieter, Hench, Jürgen, Frank, Stephan, Mansouri, Sheila, Zadeh, Gelareh, Dans, Pablo D., Orozco, Modesto, Thomas, George, Blanco, Sandra, Seoane, Joan, Preiss, Thomas, Pandolfi, Pier Paolo, Esteller, Manel
Publicado 2019