DNA binding specificity of all four Saccharomyces cerevisiae forkhead transcription factors

por Cooper, Brendon H, Dantas Machado, Ana Carolina, Gan, Yan, Aparicio, Oscar M, Rohs, Remo
Publicado 2023

Landscape of DNA binding signatures of myocyte enhancer factor-2B reveals a unique interplay of base and shape readout

por Dantas Machado, Ana Carolina, Cooper, Brendon H, Lei, Xiao, Di Felice, Rosa, Chen, Lin, Rohs, Remo
Publicado 2020

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale

por Zhou, Tianyin, Yang, Lin, Lu, Yan, Dror, Iris, Dantas Machado, Ana Carolina, Ghane, Tahereh, Di Felice, Rosa, Rohs, Remo
Publicado 2013

Structure of p53 binding to the BAX response element reveals DNA unwinding and compression to accommodate base-pair insertion

por Chen, Yongheng, Zhang, Xiaojun, Dantas Machado, Ana Carolina, Ding, Yuan, Chen, Zhuchu, Qin, Peter Z., Rohs, Remo, Chen, Lin
Publicado 2013

Evolving insights on how cytosine methylation affects protein–DNA binding

por Dantas Machado, Ana Carolina, Zhou, Tianyin, Rao, Satyanarayan, Goel, Pragya, Rastogi, Chaitanya, Lazarovici, Allan, Bussemaker, Harmen J., Rohs, Remo
Publicado 2015

Unraveling determinants of transcription factor binding outside the core binding site

por Levo, Michal, Zalckvar, Einat, Sharon, Eilon, Dantas Machado, Ana Carolina, Kalma, Yael, Lotam-Pompan, Maya, Weinberger, Adina, Yakhini, Zohar, Rohs, Remo, Segal, Eran
Publicado 2015

Conformations of p53 response elements in solution deduced using site-directed spin labeling and Monte Carlo sampling

por Zhang, Xiaojun, Dantas Machado, Ana Carolina, Ding, Yuan, Chen, Yongheng, Lu, Yan, Duan, Yankun, Tham, Kenneth W., Chen, Lin, Rohs, Remo, Qin, Peter Z.
Publicado 2014

Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome

por Allaband, Celeste, Lingaraju, Amulya, Martino, Cameron, Russell, Baylee, Tripathi, Anupriya, Poulsen, Orit, Dantas Machado, Ana Carolina, Zhou, Dan, Xue, Jin, Elijah, Emmanuel, Malhotra, Atul, Dorrestein, Pieter C., Knight, Rob, Haddad, Gabriel G., Zarrinpar, Amir
Publicado 2021

Portosystemic shunt placement reveals blood signatures for the development of hepatic encephalopathy through mass spectrometry

por Dantas Machado, Ana Carolina, Ramos, Stephany Flores, Gauglitz, Julia M., Fassler, Anne-Marie, Petras, Daniel, Aksenov, Alexander A., Kim, Un Bi, Lazarowicz, Michael, Barnard Giustini, Abbey, Aryafar, Hamed, Vodkin, Irine, Warren, Curtis, Dorrestein, Pieter C., Zarrinpar, Ali, Zarrinpar, Amir
Publicado 2023