Employing conservation of co-expression to improve functional inference

por Daub, Carsten O, Sonnhammer, Erik LL
Publicado 2008

SDRF2GRAPH – a visualization tool of a spreadsheet-based description of experimental processes

por Kawaji, Hideya, Hayashizaki, Yoshihide, Daub, Carsten O
Publicado 2009

TagDust—a program to eliminate artifacts from next generation sequencing data

por Lassmann, Timo, Hayashizaki, Yoshihide, Daub, Carsten O.
Publicado 2009

NGSView: an extensible open source editor for next-generation sequencing data

por Arner, Erik, Hayashizaki, Yoshihide, Daub, Carsten O.
Publicado 2010

SAMStat: monitoring biases in next generation sequencing data

por Lassmann, Timo, Hayashizaki, Yoshihide, Daub, Carsten O.
Publicado 2011

Estimating mutual information using B-spline functions – an improved similarity measure for analysing gene expression data

por Daub, Carsten O, Steuer, Ralf, Selbig, Joachim, Kloska, Sebastian
Publicado 2004

pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5′/3′ arm variation including concomitant cleavage and polyuridylation p...

por Burroughs, A. Maxwell, Kawano, Mitsuoki, Ando, Yoshinari, Daub, Carsten O., Hayashizaki, Yoshihide
Publicado 2012

Identification and transfer of spatial transcriptomics signatures for cancer diagnosis

por Yoosuf, Niyaz, Navarro, José Fernández, Salmén, Fredrik, Ståhl, Patrik L., Daub, Carsten O.
Publicado 2020

*-DCC: A platform to collect, annotate, and explore a large variety of sequencing experiments

por Hörtenhuber, Matthias, Mukarram, Abdul K, Stoiber, Marcus H, Brown, James B, Daub, Carsten O
Publicado 2020

MiR-107 and MiR-185 Can Induce Cell Cycle Arrest in Human Non Small Cell Lung Cancer Cell Lines

por Takahashi, Yukari, Forrest, Alistair R. R., Maeno, Emi, Hashimoto, Takehiro, Daub, Carsten O., Yasuda, Jun
Publicado 2009

Ten simple rules for annotating sequencing experiments

por Stevens, Irene, Mukarram, Abdul Kadir, Hörtenhuber, Matthias, Meehan, Terrence F., Rung, Johan, Daub, Carsten O.
Publicado 2020

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines

por Rye, Morten, Sandve, Geir Kjetil, Daub, Carsten O, Kawaji, Hideya, Carninci, Piero, Forrest, Alistair RR, Drabløs, Finn
Publicado 2014

Micro-biopsy for detection of gene expression changes in ischemic swine myocardium: A pilot study

por Chireh, Arvin, Grankvist, Rikard, Sandell, Mikael, Mukarram, Abdul Kadir, Arnberg, Fabian, Lundberg, Johan, Daub, Carsten O., Holmin, Staffan
Publicado 2021

Transcriptional features of genomic regulatory blocks

por Akalin, Altuna, Fredman, David, Arner, Erik, Dong, Xianjun, Bryne, Jan Christian, Suzuki, Harukazu, Daub, Carsten O, Hayashizaki, Yoshihide, Lenhard, Boris
Publicado 2009

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

por Balwierz, Piotr J, Carninci, Piero, Daub, Carsten O, Kawai, Jun, Hayashizaki, Yoshihide, Van Belle, Werner, Beisel, Christian, van Nimwegen, Erik
Publicado 2009

The Short Non-Coding Transcriptome of the Protozoan Parasite Trypanosoma cruzi

por Franzén, Oscar, Arner, Erik, Ferella, Marcela, Nilsson, Daniel, Respuela, Patricia, Carninci, Piero, Hayashizaki, Yoshihide, Åslund, Lena, Andersson, Björn, Daub, Carsten O.
Publicado 2011

System-wide analysis of the transcriptional network of human myelomonocytic leukemia cells predicts attractor structure and phorbol-ester-induced differentiation and dedifferentiat...

por Sakata, Katsumi, Ohyanagi, Hajime, Sato, Shinji, Nobori, Hiroya, Hayashi, Akiko, Ishii, Hideshi, Daub, Carsten O., Kawai, Jun, Suzuki, Harukazu, Saito, Toshiyuki
Publicado 2015

Characterization of the human RFX transcription factor family by regulatory and target gene analysis

por Sugiaman-Trapman, Debora, Vitezic, Morana, Jouhilahti, Eeva-Mari, Mathelier, Anthony, Lauter, Gilbert, Misra, Sougat, Daub, Carsten O., Kere, Juha, Swoboda, Peter
Publicado 2018

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns

por Kratz, Anton, Arner, Erik, Saito, Rintaro, Kubosaki, Atsutaka, Kawai, Jun, Suzuki, Harukazu, Carninci, Piero, Arakawa, Takahiro, Tomita, Masaru, Hayashizaki, Yoshihide, Daub, Carsten O
Publicado 2010

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE

por Vitezic, Morana, Lassmann, Timo, Forrest, Alistair R. R., Suzuki, Masanori, Tomaru, Yasuhiro, Kawai, Jun, Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Daub, Carsten O.
Publicado 2010