Genomic prediction of switchgrass winter survivorship across diverse lowland populations

por Tilhou, Neal W, Poudel, Hari P, Lovell, John, Mamidi, Sujan, Schmutz, Jeremy, Daum, Christopher, Zane, Matthew, Yoshinaga, Yuko, Lipzen, Anna, Casler, Michael D
Publicado 2023

High-quality RNA extraction and the regulation of genes encoding cellulosomes are correlated with growth stage in anaerobic fungi

por Brown, Jennifer L., Gierke, Taylor, Butkovich, Lazarina V., Swift, Candice L., Singan, Vasanth, Daum, Christopher, Barry, Kerrie, Grigoriev, Igor V., O’Malley, Michelle A.
Publicado 2023

Comparative Genomics of Saccharomyces cerevisiae Natural Isolates for Bioenergy Production

por Wohlbach, Dana J., Rovinskiy, Nikolay, Lewis, Jeffrey A., Sardi, Maria, Schackwitz, Wendy S., Martin, Joel A., Deshpande, Shweta, Daum, Christopher G., Lipzen, Anna, Sato, Trey K., Gasch, Audrey P.
Publicado 2014

High-resolution mapping reveals hotspots and sex-biased recombination in Populus trichocarpa

por Abeyratne, Chanaka Roshan, Macaya-Sanz, David, Zhou, Ran, Barry, Kerrie W, Daum, Christopher, Haiby, Kathy, Lipzen, Anna, Stanton, Brian, Yoshinaga, Yuko, Zane, Matthew, Tuskan, Gerald A, DiFazio, Stephen P
Publicado 2022

Next generation sequencing data of a defined microbial mock community

por Singer, Esther, Andreopoulos, Bill, Bowers, Robert M., Lee, Janey, Deshpande, Shweta, Chiniquy, Jennifer, Ciobanu, Doina, Klenk, Hans-Peter, Zane, Matthew, Daum, Christopher, Clum, Alicia, Cheng, Jan-Fang, Copeland, Alex, Woyke, Tanja
Publicado 2016

Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives

por Iwata, Mana, Gutiérrez, Ana, Marques, Gisela, Sabat, Grzegorz, Kersten, Philip J., Cullen, Daniel, Bhatnagar, Jennifer M., Yadav, Jagjit, Lipzen, Anna, Yoshinaga, Yuko, Sharma, Aditi, Adam, Catherine, Daum, Christopher, Ng, Vivian, Grigoriev, Igor V., Hori, Chiaki
Publicado 2021

Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses

por Schwessinger, Benjamin, Bahar, Ofir, Thomas, Nicolas, Holton, Nicolas, Nekrasov, Vladimir, Ruan, Deling, Canlas, Patrick E., Daudi, Arsalan, Petzold, Christopher J., Singan, Vasanth R., Kuo, Rita, Chovatia, Mansi, Daum, Christopher, Heazlewood, Joshua L., Zipfel, Cyril, Ronald, Pamela C.
Publicado 2015

Correction: Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses

por Schwessinger, Benjamin, Bahar, Ofir, Thomas, Nicholas, Holton, Nicolas, Nekrasov, Vladimir, Ruan, Deling, Canlas, Patrick E., Daudi, Arsalan, Petzold, Christopher J., Singan, Vasanth R., Kuo, Rita, Chovatia, Mansi, Daum, Christopher, Heazlewood, Joshua L., Zipfel, Cyril, Ronald, Pamela C.
Publicado 2015

A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology

por Calhoun, Sara, Bell, Tisza Ann Szeremy, Dahlin, Lukas R., Kunde, Yuliya, LaButti, Kurt, Louie, Katherine B., Kuftin, Andrea, Treen, Daniel, Dilworth, David, Mihaltcheva, Sirma, Daum, Christopher, Bowen, Benjamin P., Northen, Trent R., Guarnieri, Michael T., Starkenburg, Shawn R., Grigoriev, Igor V.
Publicado 2021

The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible

por Hao, Yue, Mabry, Makenzie E., Edger, Patrick P., Freeling, Michael, Zheng, Chunfang, Jin, Lingling, VanBuren, Robert, Colle, Marivi, An, Hong, Abrahams, R. Shawn, Washburn, Jacob D., Qi, Xinshuai, Barry, Kerrie, Daum, Christopher, Shu, Shengqiang, Schmutz, Jeremy, Sankoff, David, Barker, Michael S., Lyons, Eric, Pires, J. Chris, Conant, Gavin C.
Publicado 2021

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies

por Sevim, Volkan, Lee, Juna, Egan, Robert, Clum, Alicia, Hundley, Hope, Lee, Janey, Everroad, R. Craig, Detweiler, Angela M., Bebout, Brad M., Pett-Ridge, Jennifer, Göker, Markus, Murray, Alison E., Lindemann, Stephen R., Klenk, Hans-Peter, O’Malley, Ronan, Zane, Matthew, Cheng, Jan-Fang, Copeland, Alex, Daum, Christopher, Singer, Esther, Woyke, Tanja
Publicado 2019

Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass

por Sun, Guangchao, Wase, Nishikant, Shu, Shengqiang, Jenkins, Jerry, Zhou, Bangjun, Torres-Rodríguez, J. Vladimir, Chen, Cindy, Sandor, Laura, Plott, Chris, Yoshinga, Yuko, Daum, Christopher, Qi, Peng, Barry, Kerrie, Lipzen, Anna, Berry, Luke, Pedersen, Connor, Gottilla, Thomas, Foltz, Ashley, Yu, Huihui, O’Malley, Ronan, Zhang, Chi, Devos, Katrien M., Sigmon, Brandi, Yu, Bin, Obata, Toshihiro, Schmutz, Jeremy, Schnable, James C.
Publicado 2022

A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen

por Feurtey, Alice, Lorrain, Cécile, McDonald, Megan C., Milgate, Andrew, Solomon, Peter S., Warren, Rachael, Puccetti, Guido, Scalliet, Gabriel, Torriani, Stefano F. F., Gout, Lilian, Marcel, Thierry C., Suffert, Frédéric, Alassimone, Julien, Lipzen, Anna, Yoshinaga, Yuko, Daum, Christopher, Barry, Kerrie, Grigoriev, Igor V., Goodwin, Stephen B., Genissel, Anne, Seidl, Michael F., Stukenbrock, Eva H., Lebrun, Marc-Henri, Kema, Gert H. J., McDonald, Bruce A., Croll, Daniel
Publicado 2023

Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades

por Abraham, Briana S., Caglayan, Deniz, Carrillo, Natalie V., Chapman, Matthew C., Hagan, Claire T., Hansen, Skye T., Jeanty, Ralph O., Klimczak, Alexander A., Klingler, Marcos J., Kutcher, Thomas P., Levy, Sydney H., Millard-Bruzos, Angel A., Moore, Thomas B., Prentice, David J., Prescott, Matthew E., Roehm, Richard, Rose, Jordan A., Yin, Mulan, Hyodo, Ayumi, Lail, Kathleen, Daum, Christopher, Clum, Alicia, Copeland, Alex, Seshadri, Rekha, del Rio, Tijana Glavina, Eloe-Fadrosh, Emiley A., Benskin, Jonathan B.
Publicado 2020

Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi

por Gupta, Yogesh K., Marcelino-Guimarães, Francismar C., Lorrain, Cécile, Farmer, Andrew, Haridas, Sajeet, Ferreira, Everton Geraldo Capote, Lopes-Caitar, Valéria S., Oliveira, Liliane Santana, Morin, Emmanuelle, Widdison, Stephanie, Cameron, Connor, Inoue, Yoshihiro, Thor, Kathrin, Robinson, Kelly, Drula, Elodie, Henrissat, Bernard, LaButti, Kurt, Bini, Aline Mara Rudsit, Paget, Eric, Singan, Vasanth, Daum, Christopher, Dorme, Cécile, van Hoek, Milan, Janssen, Antoine, Chandat, Lucie, Tarriotte, Yannick, Richardson, Jake, Melo, Bernardo do Vale Araújo, Wittenberg, Alexander H. J., Schneiders, Harrie, Peyrard, Stephane, Zanardo, Larissa Goulart, Holtman, Valéria Cristina, Coulombier-Chauvel, Flavie, Link, Tobias I., Balmer, Dirk, Müller, André N., Kind, Sabine, Bohnert, Stefan, Wirtz, Louisa, Chen, Cindy, Yan, Mi, Ng, Vivian, Gautier, Pierrick, Meyer, Maurício Conrado, Voegele, Ralf Thomas, Liu, Qingli, Grigoriev, Igor V., Conrath, Uwe, Brommonschenkel, Sérgio H., Loehrer, Marco, Schaffrath, Ulrich, Sirven, Catherine, Scalliet, Gabriel, Duplessis, Sébastien, van Esse, H. Peter
Publicado 2023

JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom

por Sreedasyam, Avinash, Plott, Christopher, Hossain, Md Shakhawat, Lovell, John T, Grimwood, Jane, Jenkins, Jerry W, Daum, Christopher, Barry, Kerrie, Carlson, Joseph, Shu, Shengqiang, Phillips, Jeremy, Amirebrahimi, Mojgan, Zane, Matthew, Wang, Mei, Goodstein, David, Haas, Fabian B, Hiss, Manuel, Perroud, Pierre-François, Jawdy, Sara S, Yang, Yongil, Hu, Rongbin, Johnson, Jenifer, Kropat, Janette, Gallaher, Sean D, Lipzen, Anna, Shakirov, Eugene V, Weng, Xiaoyu, Torres-Jerez, Ivone, Weers, Brock, Conde, Daniel, Pappas, Marilia R, Liu, Lifeng, Muchlinski, Andrew, Jiang, Hui, Shyu, Christine, Huang, Pu, Sebastian, Jose, Laiben, Carol, Medlin, Alyssa, Carey, Sankalpi, Carrell, Alyssa A, Chen, Jin-Gui, Perales, Mariano, Swaminathan, Kankshita, Allona, Isabel, Grattapaglia, Dario, Cooper, Elizabeth A, Tholl, Dorothea, Vogel, John P, Weston, David J, Yang, Xiaohan, Brutnell, Thomas P, Kellogg, Elizabeth A, Baxter, Ivan, Udvardi, Michael, Tang, Yuhong, Mockler, Todd C, Juenger, Thomas E, Mullet, John, Rensing, Stefan A, Tuskan, Gerald A, Merchant, Sabeeha S, Stacey, Gary, Schmutz, Jeremy
Publicado 2023

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass

por Lovell, John T., MacQueen, Alice H., Mamidi, Sujan, Bonnette, Jason, Jenkins, Jerry, Napier, Joseph D., Sreedasyam, Avinash, Healey, Adam, Session, Adam, Shu, Shengqiang, Barry, Kerrie, Bonos, Stacy, Boston, LoriBeth, Daum, Christopher, Deshpande, Shweta, Ewing, Aren, Grabowski, Paul P., Haque, Taslima, Harrison, Melanie, Jiang, Jiming, Kudrna, Dave, Lipzen, Anna, Pendergast, Thomas H., Plott, Chris, Qi, Peng, Saski, Christopher A., Shakirov, Eugene V., Sims, David, Sharma, Manoj, Sharma, Rita, Stewart, Ada, Singan, Vasanth R., Tang, Yuhong, Thibivillier, Sandra, Webber, Jenell, Weng, Xiaoyu, Williams, Melissa, Wu, Guohong Albert, Yoshinaga, Yuko, Zane, Matthew, Zhang, Li, Zhang, Jiyi, Behrman, Kathrine D., Boe, Arvid R., Fay, Philip A., Fritschi, Felix B., Jastrow, Julie D., Lloyd-Reilley, John, Martínez-Reyna, Juan Manuel, Matamala, Roser, Mitchell, Robert B., Rouquette, Francis M., Ronald, Pamela, Saha, Malay, Tobias, Christian M., Udvardi, Michael, Wing, Rod A., Wu, Yanqi, Bartley, Laura E., Casler, Michael, Devos, Katrien M., Lowry, David B., Rokhsar, Daniel S., Grimwood, Jane, Juenger, Thomas E., Schmutz, Jeremy
Publicado 2021