Knowledge and Attitudes Among Life Scientists Toward Reproducibility Within Journal Articles: A Research Survey

por Samota, Evanthia Kaimaklioti, Davey, Robert P.
Publicado 2021

GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees pipeline

por Thanki, Anil S, Soranzo, Nicola, Haerty, Wilfried, Davey, Robert P
Publicado 2018

Aequatus: an open-source homology browser

por Thanki, Anil S, Soranzo, Nicola, Herrero, Javier, Haerty, Wilfried, Davey, Robert P
Publicado 2018

Ribosomal DNA Sequence Heterogeneity Reflects Intraspecies Phylogenies and Predicts Genome Structure in Two Contrasting Yeast Species

por West, Claire, James, Stephen A., Davey, Robert P., Dicks, Jo, Roberts, Ian N.
Publicado 2014

NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles

por Leggett, Richard M., Heavens, Darren, Caccamo, Mario, Clark, Matthew D., Davey, Robert P.
Publicado 2016

Prevalence and Dynamics of Ribosomal DNA Micro-heterogeneity Are Linked to Population History in Two Contrasting Yeast Species

por James, Stephen A., West, Claire, Davey, Robert P., Dicks, Jo, Roberts, Ian N.
Publicado 2016

wigExplorer, a BioJS component to visualise wig data

por Thanki, Anil S., Jimenez, Rafael C., Kaithakottil, Gemy G., Corpas, Manuel, Davey, Robert P.
Publicado 2016

Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics

por Leggett, Richard M., Ramirez-Gonzalez, Ricardo H., Clavijo, Bernardo J., Waite, Darren, Davey, Robert P.
Publicado 2013

A Galaxy-based training resource for single-cell RNA-sequencing quality control and analyses

por Etherington, Graham J, Soranzo, Nicola, Mohammed, Suhaib, Haerty, Wilfried, Davey, Robert P, Palma, Federica Di
Publicado 2019

LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis

por Özkurt, Ezgi, Fritscher, Joachim, Soranzo, Nicola, Ng, Duncan Y. K., Davey, Robert P., Bahram, Mohammad, Hildebrand, Falk
Publicado 2022

CerealsDB 3.0: expansion of resources and data integration

por Wilkinson, Paul A., Winfield, Mark O., Barker, Gary L. A., Tyrrell, Simon, Bian, Xingdong, Allen, Alexandra M., Burridge, Amanda, Coghill, Jane A., Waterfall, Christy, Caccamo, Mario, Davey, Robert P., Edwards, Keith J.
Publicado 2016

Data management challenges for artificial intelligence in plant and agricultural research

por Williamson, Hugh F., Brettschneider, Julia, Caccamo, Mario, Davey, Robert P., Goble, Carole, Kersey, Paul J., May, Sean, Morris, Richard J., Ostler, Richard, Pridmore, Tony, Rawlings, Chris, Studholme, David, Tsaftaris, Sotirios A., Leonelli, Sabina
Publicado 2023

CerealsDB—new tools for the analysis of the wheat genome: update 2020

por Wilkinson, Paul A, Allen, Alexandra M, Tyrrell, Simon, Wingen, Luzie U, Bian, Xingdong, Winfield, Mark O, Burridge, Amanda, Shaw, Daniel S, Zaucha, Jan, Griffiths, Simon, Davey, Robert P, Edwards, Keith J, Barker, Gary L A
Publicado 2020

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

por Waterhouse, Robert M., Adam-Blondon, Anne-Françoise, Agosti, Donat, Baldrian, Petr, Balech, Bachir, Corre, Erwan, Davey, Robert P., Lantz, Henrik, Pesole, Graziano, Quast, Christian, Glöckner, Frank Oliver, Raes, Niels, Sandionigi, Anna, Santamaria, Monica, Addink, Wouter, Vohradsky, Jiri, Nunes-Jorge, Amandine, Willassen, Nils Peder, Lanfear, Jerry
Publicado 2022

Developing data interoperability using standards: A wheat community use case

por Dzale Yeumo, Esther, Alaux, Michael, Arnaud, Elizabeth, Aubin, Sophie, Baumann, Ute, Buche, Patrice, Cooper, Laurel, Ćwiek-Kupczyńska, Hanna, Davey, Robert P., Fulss, Richard Allan, Jonquet, Clement, Laporte, Marie-Angélique, Larmande, Pierre, Pommier, Cyril, Protonotarios, Vassilis, Reverte, Carmen, Shrestha, Rosemary, Subirats, Imma, Venkatesan, Aravind, Whan, Alex, Quesneville, Hadi
Publicado 2017

ISA API: An open platform for interoperable life science experimental metadata

por Johnson, David, Batista, Dominique, Cochrane, Keeva, Davey, Robert P, Etuk, Anthony, Gonzalez-Beltran, Alejandra, Haug, Kenneth, Izzo, Massimiliano, Larralde, Martin, Lawson, Thomas N, Minotto, Alice, Moreno, Pablo, Nainala, Venkata Chandrasekhar, O'Donovan, Claire, Pireddu, Luca, Roger, Pierrick, Shaw, Felix, Steinbeck, Christoph, Weber, Ralf J M, Sansone, Susanna-Assunta, Rocca-Serra, Philippe
Publicado 2021

Population genomics of domestic and wild yeasts

por Liti, Gianni, Carter, David M., Moses, Alan M., Warringer, Jonas, Parts, Leopold, James, Stephen A., Davey, Robert P., Roberts, Ian N., Burt, Austin, Koufopanou, Vassiliki, Tsai, Isheng J., Bergman, Casey M., Bensasson, Douda, O'Kelly, Michael J. T., van Oudenaarden, Alexander, Barton, David B. H., Bailes, Elizabeth, Nguyen Ba, Alex N., Jones, Matthew, Quail, Michael A., Goodhead, Ian, Sims, Sarah, Smith, Frances, Blomberg, Anders, Durbin, Richard, Louis, Edward J.
Publicado 2009

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

por Clavijo, Bernardo J., Venturini, Luca, Schudoma, Christian, Accinelli, Gonzalo Garcia, Kaithakottil, Gemy, Wright, Jonathan, Borrill, Philippa, Kettleborough, George, Heavens, Darren, Chapman, Helen, Lipscombe, James, Barker, Tom, Lu, Fu-Hao, McKenzie, Neil, Raats, Dina, Ramirez-Gonzalez, Ricardo H., Coince, Aurore, Peel, Ned, Percival-Alwyn, Lawrence, Duncan, Owen, Trösch, Josua, Yu, Guotai, Bolser, Dan M., Namaati, Guy, Kerhornou, Arnaud, Spannagl, Manuel, Gundlach, Heidrun, Haberer, Georg, Davey, Robert P., Fosker, Christine, Palma, Federica Di, Phillips, Andrew L., Millar, A. Harvey, Kersey, Paul J., Uauy, Cristobal, Krasileva, Ksenia V., Swarbreck, David, Bevan, Michael W., Clark, Matthew D.
Publicado 2017

Standards recommendations for the Earth BioGenome Project

por Lawniczak, Mara K. N., Durbin, Richard, Flicek, Paul, Lindblad-Toh, Kerstin, Wei, Xiaofeng, Archibald, John M., Baker, William J., Belov, Katherine, Blaxter, Mark L., Marques Bonet, Tomas, Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Crawford, Andrew J., Davey, Robert P., Di Palma, Federica, Fang, Qi, Haerty, Wilfried, Hall, Neil, Hoff, Katharina J., Howe, Kerstin, Jarvis, Erich D., Johnson, Warren E., Johnson, Rebecca N., Kersey, Paul J., Liu, Xin, Lopez, Jose Victor, Myers, Eugene W., Pettersson, Olga Vinnere, Phillippy, Adam M., Poelchau, Monica F., Pruitt, Kim D., Rhie, Arang, Castilla-Rubio, Juan Carlos, Sahu, Sunil Kumar, Salmon, Nicholas A., Soltis, Pamela S., Swarbreck, David, Thibaud-Nissen, Françoise, Wang, Sibo, Wegrzyn, Jill L., Zhang, Guojie, Zhang, He, Lewin, Harris A., Richards, Stephen
Publicado 2022

Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement

por Gaurav, Kumar, Arora, Sanu, Silva, Paula, Sánchez-Martín, Javier, Horsnell, Richard, Gao, Liangliang, Brar, Gurcharn S., Widrig, Victoria, John Raupp, W., Singh, Narinder, Wu, Shuangye, Kale, Sandip M., Chinoy, Catherine, Nicholson, Paul, Quiroz-Chávez, Jesús, Simmonds, James, Hayta, Sadiye, Smedley, Mark A., Harwood, Wendy, Pearce, Suzannah, Gilbert, David, Kangara, Ngonidzashe, Gardener, Catherine, Forner-Martínez, Macarena, Liu, Jiaqian, Yu, Guotai, Boden, Scott A., Pascucci, Attilio, Ghosh, Sreya, Hafeez, Amber N., O’Hara, Tom, Waites, Joshua, Cheema, Jitender, Steuernagel, Burkhard, Patpour, Mehran, Justesen, Annemarie Fejer, Liu, Shuyu, Rudd, Jackie C., Avni, Raz, Sharon, Amir, Steiner, Barbara, Kirana, Rizky Pasthika, Buerstmayr, Hermann, Mehrabi, Ali A., Nasyrova, Firuza Y., Chayut, Noam, Matny, Oadi, Steffenson, Brian J., Sandhu, Nitika, Chhuneja, Parveen, Lagudah, Evans, Elkot, Ahmed F., Tyrrell, Simon, Bian, Xingdong, Davey, Robert P., Simonsen, Martin, Schauser, Leif, Tiwari, Vijay K., Randy Kutcher, H., Hucl, Pierre, Li, Aili, Liu, Deng-Cai, Mao, Long, Xu, Steven, Brown-Guedira, Gina, Faris, Justin, Dvorak, Jan, Luo, Ming-Cheng, Krasileva, Ksenia, Lux, Thomas, Artmeier, Susanne, Mayer, Klaus F. X., Uauy, Cristobal, Mascher, Martin, Bentley, Alison R., Keller, Beat, Poland, Jesse, Wulff, Brande B. H.
Publicado 2021