Plasmids pick a bacterial partner before committing to conjugation

por Frankel, Gad, David, Sophia, Low, Wen Wen, Seddon, Chloe, Wong, Joshua L C, Beis, Konstantinos
Publicado 2023

Spatial structuring of a Legionella pneumophila population within the water system of a large occupational building

por David, Sophia, Mentasti, Massimo, Lai, Sandra, Vaghji, Lalita, Ready, Derren, Chalker, Victoria J., Parkhill, Julian
Publicado 2018

Turner et al. Reply to “Emergence of the Same Successful Clade among Distinct Populations of emm89 Streptococcus pyogenes in Multiple Geographic Regions”

por Turner, Claire E., Lamagni, Theresa, Holden, Matthew T. G., David, Sophia, Jones, Michael D., Game, Laurence, Efstratiou, Androulla, Sriskandan, Shiranee
Publicado 2015

Genomic investigation of a suspected outbreak of Legionella pneumophila ST82 reveals undetected heterogeneity by the present gold-standard methods, Denmark, July to November 2014

por Schjørring, Susanne, Stegger, Marc, Kjelsø, Charlotte, Lilje, Berit, Bangsborg, Jette M, Petersen, Randi F, David, Sophia, Uldum, Søren A
Publicado 2017

Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila

por David, Sophia, Sánchez-Busó, Leonor, Harris, Simon R., Marttinen, Pekka, Rusniok, Christophe, Buchrieser, Carmen, Harrison, Timothy G., Parkhill, Julian
Publicado 2017

Correction: Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila

por David, Sophia, Sánchez-Busó, Leonor, Harris, Simon R., Marttinen, Pekka, Rusniok, Christophe, Buchrieser, Carmen, Harrison, Timothy G., Parkhill, Julian
Publicado 2017

Emergence of a New Highly Successful Acapsular Group A Streptococcus Clade of Genotype emm89 in the United Kingdom

por Turner, Claire E., Abbott, James, Lamagni, Theresa, Holden, Matthew T. G., David, Sophia, Jones, Michael D., Game, Laurence, Efstratiou, Androulla, Sriskandan, Shiranee
Publicado 2015

Evaluation of an Optimal Epidemiological Typing Scheme for Legionella pneumophila with Whole-Genome Sequence Data Using Validation Guidelines

por David, Sophia, Mentasti, Massimo, Tewolde, Rediat, Aslett, Martin, Harris, Simon R., Afshar, Baharak, Underwood, Anthony, Fry, Norman K., Parkhill, Julian, Harrison, Timothy G.
Publicado 2016

Seeding and Establishment of Legionella pneumophila in Hospitals: Implications for Genomic Investigations of Nosocomial Legionnaires’ Disease

por David, Sophia, Afshar, Baharak, Mentasti, Massimo, Ginevra, Christophe, Podglajen, Isabelle, Harris, Simon R., Chalker, Victoria J., Jarraud, Sophie, Harrison, Timothy G., Parkhill, Julian
Publicado 2017

Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae

por David, Sophia, Cohen, Victoria, Reuter, Sandra, Sheppard, Anna E., Giani, Tommaso, Parkhill, Julian, Rossolini, Gian Maria, Feil, Edward J., Grundmann, Hajo, Aanensen, David M.
Publicado 2020

Global scenario of the RmtE pan-aminoglycoside-resistance mechanism: emergence of the rmtE4 gene in South America associated with a hospital-related IncL plasmid

por Delgado-Blas, Jose F., Ovejero, Cristina M., David, Sophia, Serna, Carlos, Pulido-Vadillo, Mario, Montero, Natalia, Aanensen, David M., Abadia-Patiño, Lorena, Gonzalez-Zorn, Bruno
Publicado 2023

Genomic surveillance of multidrug-resistant Klebsiella in Wales reveals persistent spread of Klebsiella pneumoniae ST307 and adaptive evolution of pOXA-48-like plasmids

por David, Sophia, Mentasti, Massimo, Sands, Kirsty, Portal, Edward, Graham, Lee, Watkins, Joanne, Williams, Catie, Healy, Brendan, Spiller, Owen B., Aanensen, David M., Wootton, Mandy, Jones, Lim
Publicado 2023

Novel Subclone of Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 with Enhanced Virulence and Transmissibility, China

por Zhou, Kai, Xiao, Tingting, David, Sophia, Wang, Qin, Zhou, Yanzi, Guo, Lihua, Aanensen, David, Holt, Kathryn E., Thomson, Nicholas R., Grundmann, Hajo, Shen, Ping, Xiao, Yonghong
Publicado 2020

Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection

por Crellen, Thomas, Allan, Fiona, David, Sophia, Durrant, Caroline, Huckvale, Thomas, Holroyd, Nancy, Emery, Aidan M., Rollinson, David, Aanensen, David M., Berriman, Matthew, Webster, Joanne P., Cotton, James A.
Publicado 2016

Clonal expansion and rapid characterization of Klebsiella pneumoniae ST1788, an otherwise uncommon strain spreading in Wales, UK

por Mentasti, Massimo, David, Sophia, Turton, Jane, Morgan, Mari, Turner, Luke, Westlake, Joseph, Jenkins, Jonathan, Williams, Catie, Rey, Sara, Watkins, Joanne, Daniel, Victoria, Mitchell, Shanine, Forbes, Gavin, Wootton, Mandy, Jones, Lim
Publicado 2023

Population genomics and antimicrobial resistance dynamics of Escherichia coli in wastewater and river environments

por Delgado-Blas, Jose F., Ovejero, Cristina M., David, Sophia, Montero, Natalia, Calero-Caceres, William, Garcillan-Barcia, M. Pilar, de la Cruz, Fernando, Muniesa, Maite, Aanensen, David M., Gonzalez-Zorn, Bruno
Publicado 2021

High-resolution sweep metagenomics using fast probabilistic inference

por Mäklin, Tommi, Kallonen, Teemu, David, Sophia, Boinett, Christine J., Pascoe, Ben, Méric, Guillaume, Aanensen, David M., Feil, Edward J., Baker, Stephen, Parkhill, Julian, Sheppard, Samuel K., Corander, Jukka, Honkela, Antti
Publicado 2021

Corrigendum: ‘Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae’

por Foster-Nyarko, Ebenezer, Cottingham, Hugh, Wick, Ryan R., Judd, Louise M., Lam, Margaret M. C., Wyres, Kelly L., Stanton, Thomas D., Tsang, Kara K., David, Sophia, Aanensen, David M., Brisse, Sylvain, Holt, Kathryn E.
Publicado 2023

Widespread emergence of OmpK36 loop 3 insertions among multidrug-resistant clones of Klebsiella pneumoniae

por David, Sophia, Wong, Joshua L. C., Sanchez-Garrido, Julia, Kwong, Hok-Sau, Low, Wen Wen, Morecchiato, Fabio, Giani, Tommaso, Rossolini, Gian Maria, Brett, Stephen J., Clements, Abigail, Beis, Konstantinos, Aanensen, David M., Frankel, Gad
Publicado 2022

Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae

por Foster-Nyarko, Ebenezer, Cottingham, Hugh, Wick, Ryan R., Judd, Louise M., Lam, Margaret M. C., Wyres, Kelly L., Stanton, Thomas D., Tsang, Kara K., David, Sophia, Aanensen, David M., Brisse, Sylvain, Holt, Kathryn E.
Publicado 2023