Corset: enabling differential gene expression analysis for de novo assembled transcriptomes

por Davidson, Nadia M, Oshlack, Alicia
Publicado 2014

Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis

por Davidson, Nadia M, Oshlack, Alicia
Publicado 2018

Using equivalence class counts for fast and accurate testing of differential transcript usage

por Cmero, Marek, Davidson, Nadia M., Oshlack, Alicia
Publicado 2019

JAFFA: High sensitivity transcriptome-focused fusion gene detection

por Davidson, Nadia M, Majewski, Ian J, Oshlack, Alicia
Publicado 2015

SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes

por Davidson, Nadia M., Hawkins, Anthony D. K., Oshlack, Alicia
Publicado 2017

Erratum to: SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes

por Davidson, Nadia M., Hawkins, Anthony D. K., Oshlack, Alicia
Publicado 2017

MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data

por Cmero, Marek, Schmidt, Breon, Majewski, Ian J., Ekert, Paul G., Oshlack, Alicia, Davidson, Nadia M.
Publicado 2021

Identification of candidate gonadal sex differentiation genes in the chicken embryo using RNA-seq

por Ayers, Katie L., Lambeth, Luke S., Davidson, Nadia M., Sinclair, Andrew H., Oshlack, Alicia, Smith, Craig A.
Publicado 2015

Erratum to: ‘Identification of candidate gonadal sex differentiation genes in the chicken embryo using RNA-seq’

por Ayers, Katie L., Lambeth, Luke S., Davidson, Nadia M., Sinclair, Andrew H., Oshlack, Alicia, Smith, Craig A.
Publicado 2016

Limb patterning genes and heterochronic development of the emu wing bud

por Smith, Craig A., Farlie, Peter G., Davidson, Nadia M., Roeszler, Kelly N., Hirst, Claire, Oshlack, Alicia, Lambert, David M.
Publicado 2016

JAFFAL: detecting fusion genes with long-read transcriptome sequencing

por Davidson, Nadia M., Chen, Ying, Sadras, Teresa, Ryland, Georgina L., Blombery, Piers, Ekert, Paul G., Göke, Jonathan, Oshlack, Alicia
Publicado 2022

Clinker: visualizing fusion genes detected in RNA-seq data

por Schmidt, Breon M, Davidson, Nadia M, Hawkins, Anthony D K, Bartolo, Ray, Majewski, Ian J, Ekert, Paul G, Oshlack, Alicia
Publicado 2018

RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome

por Ayers, Katie L, Davidson, Nadia M, Demiyah, Diana, Roeszler, Kelly N, Grützner, Frank, Sinclair, Andrew H, Oshlack, Alicia, Smith, Craig A
Publicado 2013

Co-option of the cardiac transcription factor Nkx2.5 during development of the emu wing

por Farlie, Peter G., Davidson, Nadia M., Baker, Naomi L., Raabus, Mai, Roeszler, Kelly N., Hirst, Claire, Major, Andrew, Mariette, Mylene M., Lambert, David M., Oshlack, Alicia, Smith, Craig A.
Publicado 2017

ALLSorts: an RNA-Seq subtype classifier for B-cell acute lymphoblastic leukemia

por Schmidt, Breon, Brown, Lauren M., Ryland, Georgina L., Lonsdale, Andrew, Kosasih, Hansen J., Ludlow, Louise E., Majewski, Ian J., Blombery, Piers, Ekert, Paul G., Davidson, Nadia M., Oshlack, Alicia
Publicado 2022

Human yolk sac-like haematopoiesis generates RUNX1-, GFI1- and/or GFI1B-dependent blood and SOX17-positive endothelium

por Bruveris, Freya F., Ng, Elizabeth S., Leitoguinho, Ana Rita, Motazedian, Ali, Vlahos, Katerina, Sourris, Koula, Mayberry, Robyn, McDonald, Penelope, Azzola, Lisa, Davidson, Nadia M., Oshlack, Alicia, Stanley, Edouard G., Elefanty, Andrew G.
Publicado 2020

SFPQ-ABL1 and BCR-ABL1 use different signaling networks to drive B-cell acute lymphoblastic leukemia

por Brown, Lauren M., Hediyeh-zadeh, Soroor, Sadras, Teresa, Huckstep, Hannah, Sandow, Jarrod J., Bartolo, Ray C., Kosasih, Hansen J., Davidson, Nadia M., Schmidt, Breon, Bjelosevic, Stefan, Johnstone, Ricky, Webb, Andrew I., Khaw, Seong L., Oshlack, Alicia, Davis, Melissa J., Ekert, Paul G.
Publicado 2022

Unusual PDGFRB fusion reveals novel mechanism of kinase activation in Ph-like B-ALL

por Sadras, Teresa, Jalud, Fatimah B., Kosasih, Hansen J., Horne, Christopher R., Brown, Lauren M., El-Kamand, Sam, de Bock, Charles E., McAloney, Lachlan, Ng, Ashley P., Davidson, Nadia M., Ludlow, Louise E. A., Oshlack, Alicia, Cowley, Mark J., Khaw, Seong L., Murphy, James M., Ekert, Paul G.
Publicado 2023

Variants in SART3 cause a spliceosomopathy characterised by failure of testis development and neuronal defects

por Ayers, Katie L., Eggers, Stefanie, Rollo, Ben N., Smith, Katherine R., Davidson, Nadia M., Siddall, Nicole A., Zhao, Liang, Bowles, Josephine, Weiss, Karin, Zanni, Ginevra, Burglen, Lydie, Ben-Shachar, Shay, Rosensaft, Jenny, Raas-Rothschild, Annick, Jørgensen, Anne, Schittenhelm, Ralf B., Huang, Cheng, Robevska, Gorjana, van den Bergen, Jocelyn, Casagranda, Franca, Cyza, Justyna, Pachernegg, Svenja, Wright, David K., Bahlo, Melanie, Oshlack, Alicia, O’Brien, Terrence J., Kwan, Patrick, Koopman, Peter, Hime, Gary R., Girard, Nadine, Hoffmann, Chen, Shilon, Yuval, Zung, Amnon, Bertini, Enrico, Milh, Mathieu, Ben Rhouma, Bochra, Belguith, Neila, Bashamboo, Anu, McElreavey, Kenneth, Banne, Ehud, Weintrob, Naomi, BenZeev, Bruria, Sinclair, Andrew H.
Publicado 2023

Author Correction: Variants in SART3 cause a spliceosomopathy characterised by failure of testis development and neuronal defects

por Ayers, Katie L., Eggers, Stefanie, Rollo, Ben N., Smith, Katherine R., Davidson, Nadia M., Siddall, Nicole A., Zhao, Liang, Bowles, Josephine, Weiss, Karin, Zanni, Ginevra, Burglen, Lydie, Ben-Shachar, Shay, Rosensaft, Jenny, Raas-Rothschild, Annick, Jørgensen, Anne, Schittenhelm, Ralf B., Huang, Cheng, Robevska, Gorjana, van den Bergen, Jocelyn, Casagranda, Franca, Cyza, Justyna, Pachernegg, Svenja, Wright, David K., Bahlo, Melanie, Oshlack, Alicia, O’Brien, Terrence J., Kwan, Patrick, Koopman, Peter, Hime, Gary R., Girard, Nadine, Hoffmann, Chen, Shilon, Yuval, Zung, Amnon, Bertini, Enrico, Milh, Mathieu, Ben Rhouma, Bochra, Belguith, Neila, Bashamboo, Anu, McElreavey, Kenneth, Banne, Ehud, Weintrob, Naomi, BenZeev, Bruria, Sinclair, Andrew H.
Publicado 2023