Integrating single cell sequencing with a spatial quantitative systems pharmacology model spQSP for personalized prediction of triple-negative breast cancer immunotherapy response

por Zhang, Shuming, Gong, Chang, Ruiz-Martinez, Alvaro, Wang, Hanwen, Davis-Marcisak, Emily, Deshpande, Atul, Popel, Aleksander S., Fertig, Elana J.
Publicado 2021

Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell lin...

por Kagohara, Luciane T., Zamuner, Fernando, Davis-Marcisak, Emily F., Sharma, Gaurav, Considine, Michael, Allen, Jawara, Yegnasubramanian, Srinivasan, Gaykalova, Daria A., Fertig, Elana J.
Publicado 2020

Correction: Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensit...

por Kagohara, Luciane T., Zamuner, Fernando, Davis-Marcisak, Emily F., Sharma, Gaurav, Considine, Michael, Allen, Jawara, Yegnasubramanian, Srinivasan, Gaykalova, Daria A., Fertig, Elana J.
Publicado 2020

Transfer learning between preclinical models and human tumors identifies a conserved NK cell activation signature in anti-CTLA-4 responsive tumors

por Davis-Marcisak, Emily F., Fitzgerald, Allison A., Kessler, Michael D., Danilova, Ludmila, Jaffee, Elizabeth M., Zaidi, Neeha, Weiner, Louis M., Fertig, Elana J.
Publicado 2021

Evaluation of both exonic and intronic variants for effects on RNA splicing allows for accurate assessment of the effectiveness of precision therapies

por Joynt, Anya T., Evans, Taylor A., Pellicore, Matthew J., Davis-Marcisak, Emily F., Aksit, Melis A., Eastman, Alice C., Patel, Shivani U., Paul, Kathleen C., Osorio, Derek L., Bowling, Alyssa D., Cotton, Calvin U., Raraigh, Karen S., West, Natalie E., Merlo, Christian A., Cutting, Garry R., Sharma, Neeraj
Publicado 2020

Community-wide hackathons to identify central themes in single-cell multi-omics

por Lê Cao, Kim-Anh, Abadi, Al J., Davis-Marcisak, Emily F., Hsu, Lauren, Arora, Arshi, Coullomb, Alexis, Deshpande, Atul, Feng, Yuzhou, Jeganathan, Pratheepa, Loth, Melanie, Meng, Chen, Mu, Wancen, Pancaldi, Vera, Sankaran, Kris, Righelli, Dario, Singh, Amrit, Sodicoff, Joshua S., Stein-O’Brien, Genevieve L., Subramanian, Ayshwarya, Welch, Joshua D., You, Yue, Argelaguet, Ricard, Carey, Vincent J., Dries, Ruben, Greene, Casey S., Holmes, Susan, Love, Michael I., Ritchie, Matthew E., Yuan, Guo-Cheng, Culhane, Aedin C., Fertig, Elana
Publicado 2021

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

por Cao, Kim-Anh Lê, Abadi, Al J., Davis-Marcisak, Emily F., Hsu, Lauren, Arora, Arshi, Coullomb, Alexis, Deshpande, Atul, Feng, Yuzhou, Jeganathan, Pratheepa, Loth, Melanie, Meng, Chen, Mu, Wancen, Pancaldi, Vera, Sankaran, Kris, Righelli, Dario, Singh, Amrit, Sodicoff, Joshua S., Stein-O’Brien, Genevieve L., Subramanian, Ayshwarya, Welch, Joshua D., You, Yue, Argelaguet, Ricard, Carey, Vincent J., Dries, Ruben, Greene, Casey S., Holmes, Susan, Love, Michael I., Ritchie, Matthew E., Yuan, Guo-Cheng, Culhane, Aedin C., Fertig, Elana
Publicado 2021