Low nucleosome occupancy is encoded around functional human transcription factor binding sites

por Daenen, Floris, van Roy, Frans, De Bleser, Pieter J
Publicado 2008

A distance difference matrix approach to identifying transcription factors that regulate differential gene expression

por De Bleser, Pieter, Hooghe, Bart, Vlieghe, Dominique, van Roy, Frans
Publicado 2007

ConTra: a promoter alignment analysis tool for identification of transcription factor binding sites across species

por Hooghe, Bart, Hulpiau, Paco, van Roy, Frans, De Bleser, Pieter
Publicado 2008

A flexible integrative approach based on random forest improves prediction of transcription factor binding sites

por Hooghe, Bart, Broos, Stefan, van Roy, Frans, De Bleser, Pieter
Publicado 2012

ConTra v3: a tool to identify transcription factor binding sites across species, update 2017

por Kreft, Łukasz, Soete, Arne, Hulpiau, Paco, Botzki, Alexander, Saeys, Yvan, De Bleser, Pieter
Publicado 2017

ConTra v2: a tool to identify transcription factor binding sites across species, update 2011

por Broos, Stefan, Hulpiau, Paco, Galle, Jeroen, Hooghe, Bart, Van Roy, Frans, De Bleser, Pieter
Publicado 2011

PhysBinder: improving the prediction of transcription factor binding sites by flexible inclusion of biophysical properties

por Broos, Stefan, Soete, Arne, Hooghe, Bart, Moran, Raymond, van Roy, Frans, De Bleser, Pieter
Publicado 2013

Novel expression cassettes for increasing apolipoprotein AI transgene expression in vascular endothelial cells

por Sethuraman, Meena, Dronadula, Nagadhara, Bi, Lianxiang, Wacker, Bradley K., Knight, Ethan, De Bleser, Pieter, Dichek, David A.
Publicado 2022

A new generation of JASPAR, the open-access repository for transcription factor binding site profiles

por Vlieghe, Dominique, Sandelin, Albin, De Bleser, Pieter J., Vleminckx, Kris, Wasserman, Wyeth W., van Roy, Frans, Lenhard, Boris
Publicado 2006

CARD14 Signalling Ensures Cell Survival and Cancer Associated Gene Expression in Prostate Cancer Cells

por Vanneste, Domien, Staal, Jens, Haegman, Mira, Driege, Yasmine, Carels, Marieke, Van Nuffel, Elien, De Bleser, Pieter, Saeys, Yvan, Beyaert, Rudi, Afonina, Inna S.
Publicado 2022

αT-catenin in restricted brain cell types and its potential connection to autism

por Folmsbee, Stephen Sai, Wilcox, Douglas R., Tyberghein, Koen, De Bleser, Pieter, Tourtellotte, Warren G., van Hengel, Jolanda, van Roy, Frans, Gottardi, Cara J.
Publicado 2016

Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay

por Trypsteen, Wim, Mohammadi, Pejman, Van Hecke, Clarissa, Mestdagh, Pieter, Lefever, Steve, Saeys, Yvan, De Bleser, Pieter, Vandesompele, Jo, Ciuffi, Angela, Vandekerckhove, Linos, De Spiegelaere, Ward
Publicado 2016

Corrigendum: Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay

por Trypsteen, Wim, Mohammadi, Pejman, Van Hecke, Clarissa, Mestdagh, Pieter, Lefever, Steve, Saeys, Yvan, De Bleser, Pieter, Vandesompele, Jo, Ciuffi, Angela, Vandekerckhove, Linos, De Spiegelaere, Ward
Publicado 2017

Genome-wide Computational Analysis Reveals Cardiomyocyte-specific Transcriptional Cis-regulatory Motifs That Enable Efficient Cardiac Gene Therapy

por Rincon, Melvin Y, Sarcar, Shilpita, Danso-Abeam, Dina, Keyaerts, Marleen, Matrai, Janka, Samara-Kuko, Ermira, Acosta-Sanchez, Abel, Athanasopoulos, Takis, Dickson, George, Lahoutte, Tony, De Bleser, Pieter, VandenDriessche, Thierry, Chuah, Marinee K
Publicado 2015

Mechanical strain determines the site-specific localization of inflammation and tissue damage in arthritis

por Cambré, Isabelle, Gaublomme, Djoere, Burssens, Arne, Jacques, Peggy, Schryvers, Nadia, De Muynck, Amélie, Meuris, Leander, Lambrecht, Stijn, Carter, Shea, de Bleser, Pieter, Saeys, Yvan, Van Hoorebeke, Luc, Kollias, George, Mack, Matthias, Simoens, Paul, Lories, Rik, Callewaert, Nico, Schett, Georg, Elewaut, Dirk
Publicado 2018

Liver-Specific Transcriptional Modules Identified by Genome-Wide In Silico Analysis Enable Efficient Gene Therapy in Mice and Non-Human Primates

por Chuah, Marinee K, Petrus, Inge, De Bleser, Pieter, Le Guiner, Caroline, Gernoux, Gwladys, Adjali, Oumeya, Nair, Nisha, Willems, Jessica, Evens, Hanneke, Rincon, Melvin Y, Matrai, Janka, Di Matteo, Mario, Samara-Kuko, Ermira, Yan, Bing, Acosta-Sanchez, Abel, Meliani, Amine, Cherel, Ghislaine, Blouin, Véronique, Christophe, Olivier, Moullier, Philippe, Mingozzi, Federico, VandenDriessche, Thierry
Publicado 2014

Stellate Cells, Hepatocytes, and Endothelial Cells Imprint the Kupffer Cell Identity on Monocytes Colonizing the Liver Macrophage Niche

por Bonnardel, Johnny, T’Jonck, Wouter, Gaublomme, Djoere, Browaeys, Robin, Scott, Charlotte L., Martens, Liesbet, Vanneste, Bavo, De Prijck, Sofie, Nedospasov, Sergei A., Kremer, Anna, Van Hamme, Evelien, Borghgraef, Peter, Toussaint, Wendy, De Bleser, Pieter, Mannaerts, Inge, Beschin, Alain, van Grunsven, Leo A., Lambrecht, Bart N., Taghon, Tom, Lippens, Saskia, Elewaut, Dirk, Saeys, Yvan, Guilliams, Martin
Publicado 2019

The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages

por Scott, Charlotte L., T’Jonck, Wouter, Martens, Liesbet, Todorov, Helena, Sichien, Dorine, Soen, Bieke, Bonnardel, Johnny, De Prijck, Sofie, Vandamme, Niels, Cannoodt, Robrecht, Saelens, Wouter, Vanneste, Bavo, Toussaint, Wendy, De Bleser, Pieter, Takahashi, Nozomi, Vandenabeele, Peter, Henri, Sandrine, Pridans, Clare, Hume, David A., Lambrecht, Bart N., De Baetselier, Patrick, Milling, Simon W.F., Van Ginderachter, Jo A., Malissen, Bernard, Berx, Geert, Beschin, Alain, Saeys, Yvan, Guilliams, Martin
Publicado 2018

ORegAnno: an open-access community-driven resource for regulatory annotation

por Griffith, Obi L., Montgomery, Stephen B., Bernier, Bridget, Chu, Bryan, Kasaian, Katayoon, Aerts, Stein, Mahony, Shaun, Sleumer, Monica C., Bilenky, Mikhail, Haeussler, Maximilian, Griffith, Malachi, Gallo, Steven M., Giardine, Belinda, Hooghe, Bart, Van Loo, Peter, Blanco, Enrique, Ticoll, Amy, Lithwick, Stuart, Portales-Casamar, Elodie, Donaldson, Ian J., Robertson, Gordon, Wadelius, Claes, De Bleser, Pieter, Vlieghe, Dominique, Halfon, Marc S., Wasserman, Wyeth, Hardison, Ross, Bergman, Casey M., Jones, Steven J.M.
Publicado 2008