The Cumulative Indel Model: Fast and Accurate Statistical Evolutionary Alignment

por De Maio, Nicola
Publicado 2020

Accounting for spatial sampling patterns in Bayesian phylogeography

por Guindon, Stéphane, De Maio, Nicola
Publicado 2021

The Bacterial Sequential Markov Coalescent

por De Maio, Nicola, Wilson, Daniel J.
Publicado 2017

Linking Great Apes Genome Evolution across Time Scales Using Polymorphism-Aware Phylogenetic Models

por De Maio, Nicola, Schlötterer, Christian, Kosiol, Carolin
Publicado 2013

PoMo: An Allele Frequency-Based Approach for Species Tree Estimation

por De Maio, Nicola, Schrempf, Dominik, Kosiol, Carolin
Publicado 2015

Estimating Empirical Codon Hidden Markov Models

por De Maio, Nicola, Holmes, Ian, Schlötterer, Christian, Kosiol, Carolin
Publicado 2013

SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent

por De Maio, Nicola, Wu, Chieh-Hsi, Wilson, Daniel J
Publicado 2016

Short-range template switching in great ape genomes explored using pair hidden Markov models

por Walker, Conor R., Scally, Aylwyn, De Maio, Nicola, Goldman, Nick
Publicado 2021

Bayesian reconstruction of transmission within outbreaks using genomic variants

por De Maio, Nicola, Worby, Colin J., Wilson, Daniel J., Stoesser, Nicole
Publicado 2018

New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation

por De Maio, Nicola, Wu, Chieh-Hsi, O’Reilly, Kathleen M, Wilson, Daniel
Publicado 2015

Community-like genome in single cells of the sulfur bacterium Achromatium oxaliferum

por Ionescu, Danny, Bizic-Ionescu, Mina, De Maio, Nicola, Cypionka, Heribert, Grossart, Hans-Peter
Publicado 2017

VGsim: scalable viral genealogy simulator for global pandemic

por Shchur, Vladimir, Spirin, Vadim, Sirotkin, Dmitry, Burovski, Evgeni, De Maio, Nicola, Corbett-Detig, Russell
Publicado 2021

VGsim: Scalable viral genealogy simulator for global pandemic

por Shchur, Vladimir, Spirin, Vadim, Sirotkin, Dmitry, Burovski, Evgeni, De Maio, Nicola, Corbett-Detig, Russell
Publicado 2022

Maximum likelihood pandemic-scale phylogenetics

por De Maio, Nicola, Kalaghatgi, Prabhav, Turakhia, Yatish, Corbett-Detig, Russell, Minh, Bui Quang, Goldman, Nick
Publicado 2023

Dynamic, adaptive sampling during nanopore sequencing using Bayesian experimental design

por Weilguny, Lukas, De Maio, Nicola, Munro, Rory, Manser, Charlotte, Birney, Ewan, Loose, Matthew, Goldman, Nick
Publicado 2023

MUTATION RATES AND SELECTION ON SYNONYMOUS MUTATIONS IN SARS-COV-2

por De Maio, Nicola, Walker, Conor R., Turakhia, Yatish, Lanfear, Robert, Corbett-Detig, Russell, Goldman, Nick
Publicado 2021

Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk

por Kalkauskas, Antanas, Perron, Umberto, Sun, Yuxuan, Goldman, Nick, Baele, Guy, Guindon, Stephane, De Maio, Nicola
Publicado 2021

Mutation Rates and Selection on Synonymous Mutations in SARS-CoV-2

por De Maio, Nicola, Walker, Conor R, Turakhia, Yatish, Lanfear, Robert, Corbett-Detig, Russell, Goldman, Nick
Publicado 2021

Maximum likelihood pandemic-scale phylogenetics

por De Maio, Nicola, Kalaghatgi, Prabhav, Turakhia, Yatish, Corbett-Detig, Russell, Minh, Bui Quang, Goldman, Nick
Publicado 2022

Impact and mitigation of sampling bias to determine viral spread: Evaluating discrete phylogeography through CTMC modeling and structured coalescent model approximations

por Layan, Maylis, Müller, Nicola F, Dellicour, Simon, De Maio, Nicola, Bourhy, Hervé, Cauchemez, Simon, Baele, Guy
Publicado 2023