Optimized workflow for single-cell transcriptomics on infectious diseases including COVID-19

de réir De Domenico, Elena, Bonaguro, Lorenzo, Schulte-Schrepping, Jonas, Becker, Matthias, Händler, Kristian, Schultze, Joachim L.
Foilsithe / Cruthaithe 2020

Molecular asymmetry in the 8-cell stage Xenopus tropicalis embryo described by single blastomere transcript sequencing

de réir De Domenico, Elena, Owens, Nick D.L., Grant, Ian M., Gomes-Faria, Rosa, Gilchrist, Michael J.
Foilsithe / Cruthaithe 2015

Neutrophils in COVID-19

de réir Reusch, Nico, De Domenico, Elena, Bonaguro, Lorenzo, Schulte-Schrepping, Jonas, Baßler, Kevin, Schultze, Joachim L., Aschenbrenner, Anna C.
Foilsithe / Cruthaithe 2021

Analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling in the activation of neural stem progenitor cells

de réir Peñailillo, Johany, Palacios, Miriam, Mounieres, Constanza, Muñoz, Rosana, Slater, Paula G., De Domenico, Elena, Patrushev, Ilya, Gilchrist, Mike, Larraín, Juan
Foilsithe / Cruthaithe 2021

High-resolution analysis of gene activity during the Xenopus mid-blastula transition

de réir Collart, Clara, Owens, Nick D. L., Bhaw-Rosun, Leena, Cooper, Brook, De Domenico, Elena, Patrushev, Ilya, Sesay, Abdul K., Smith, James N., Smith, James C., Gilchrist, Michael J.
Foilsithe / Cruthaithe 2014

A cAMP signalosome in primary cilia drives gene expression and kidney cyst formation

de réir Hansen, Jan N, Kaiser, Fabian, Leyendecker, Philipp, Stüven, Birthe, Krause, Jens‐Henning, Derakhshandeh, Fatemeh, Irfan, Jaazba, Sroka, Tommy J, Preval, Kenley M, Desai, Paurav B, Kraut, Michael, Theis, Heidi, Drews, Anna‐Dorothee, De‐Domenico, Elena, Händler, Kristian, Pazour, Gregory J, Henderson, David J P, Mick, David U, Wachten, Dagmar
Foilsithe / Cruthaithe 2022

Chromatin accessibility profiling of targeted cell populations with laser capture microdissection coupled to ATAC-seq

de réir Carraro, Caterina, Bonaguro, Lorenzo, Srinivasa, Rachana, van Uelft, Martina, Isakzai, Victoria, Schulte-Schrepping, Jonas, Gambhir, Prerna, Elmzzahi, Tarek, Montgomery, Jessica V., Hayer, Hannah, Li, Yuanfang, Theis, Heidi, Kraut, Michael, Mahbubani, Krishnaa T., Aschenbrenner, Anna C., König, Ireen, Fava, Eugenio, Fried, Hans-Ulrich, De Domenico, Elena, Beyer, Marc, Saglam, Adem, Schultze, Joachim L.
Foilsithe / Cruthaithe 2023

The discovAIR project: a roadmap towards the Human Lung Cell Atlas

de réir Luecken, Malte D., Zaragosi, Laure-Emmanuelle, Madissoon, Elo, Sikkema, Lisa, Firsova, Alexandra B., De Domenico, Elena, Kümmerle, Louis, Saglam, Adem, Berg, Marijn, Gay, Aurore C.A., Schniering, Janine, Mayr, Christoph H., Abalo, Xesús M., Larsson, Ludvig, Sountoulidis, Alexandros, Teichmann, Sarah A., van Eunen, Karen, Koppelman, Gerard H., Saeb-Parsy, Kourosh, Leroy, Sylvie, Powell, Pippa, Sarkans, Ugis, Timens, Wim, Lundeberg, Joakim, van den Berge, Maarten, Nilsson, Mats, Horváth, Peter, Denning, Jessica, Papatheodorou, Irene, Schultze, Joachim L., Schiller, Herbert B., Barbry, Pascal, Petoukhov, Ilya, Misharin, Alexander V., Adcock, Ian M., von Papen, Michael, Theis, Fabian J., Samakovlis, Christos, Meyer, Kerstin B., Nawijn, Martijn C.
Foilsithe / Cruthaithe 2022

Alveolar macrophages in early stage COPD show functional deviations with properties of impaired immune activation

de réir Baßler, Kevin, Fujii, Wataru, Kapellos, Theodore S., Dudkin, Erika, Reusch, Nico, Horne, Ari, Reiz, Benedikt, Luecken, Malte D., Osei-Sarpong, Collins, Warnat-Herresthal, Stefanie, Bonaguro, Lorenzo, Schulte-Schrepping, Jonas, Wagner, Allon, Günther, Patrick, Pizarro, Carmen, Schreiber, Tina, Knoll, Rainer, Holsten, Lisa, Kröger, Charlotte, De Domenico, Elena, Becker, Matthias, Händler, Kristian, Wohnhaas, Christian T., Baumgartner, Florian, Köhler, Meike, Theis, Heidi, Kraut, Michael, Wadsworth, Marc H., Hughes, Travis K., Ferreira, Humberto J., Hinkley, Emily, Kaltheuner, Ines H., Geyer, Matthias, Thiele, Christoph, Shalek, Alex K., Feißt, Andreas, Thomas, Daniel, Dickten, Henning, Beyer, Marc, Baum, Patrick, Yosef, Nir, Aschenbrenner, Anna C., Ulas, Thomas, Hasenauer, Jan, Theis, Fabian J., Skowasch, Dirk, Schultze, Joachim L.
Foilsithe / Cruthaithe 2022

Systemic alterations in neutrophils and their precursors in early-stage chronic obstructive pulmonary disease

de réir Kapellos, Theodore S., Baßler, Kevin, Fujii, Wataru, Nalkurthi, Christina, Schaar, Anna C., Bonaguro, Lorenzo, Pecht, Tal, Galvao, Izabela, Agrawal, Shobhit, Saglam, Adem, Dudkin, Erica, Frishberg, Amit, de Domenico, Elena, Horne, Arik, Donovan, Chantal, Kim, Richard Y., Gallego-Ortega, David, Gillett, Tessa E., Ansari, Meshal, Schulte-Schrepping, Jonas, Offermann, Nina, Antignano, Ignazio, Sivri, Burcu, Lu, Wenying, Eapen, Mathew S., van Uelft, Martina, Osei-Sarpong, Collins, van den Berge, Maarten, Donker, Hylke C., Groen, Harry J.M., Sohal, Sukhwinder S., Klein, Johanna, Schreiber, Tina, Feißt, Andreas, Yildirim, Ali Önder, Schiller, Herbert B., Nawijn, Martijn C., Becker, Matthias, Händler, Kristian, Beyer, Marc, Capasso, Melania, Ulas, Thomas, Hasenauer, Jan, Pizarro, Carmen, Theis, Fabian J., Hansbro, Philip M., Skowasch, Dirk, Schultze, Joachim L.
Foilsithe / Cruthaithe 2023

Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19

de réir Krämer, Benjamin, Knoll, Rainer, Bonaguro, Lorenzo, ToVinh, Michael, Raabe, Jan, Astaburuaga-García, Rosario, Schulte-Schrepping, Jonas, Kaiser, Kim Melanie, Rieke, Gereon J., Bischoff, Jenny, Monin, Malte B., Hoffmeister, Christoph, Schlabe, Stefan, De Domenico, Elena, Reusch, Nico, Händler, Kristian, Reynolds, Gary, Blüthgen, Nils, Hack, Gudrun, Finnemann, Claudia, Nischalke, Hans D., Strassburg, Christian P., Stephenson, Emily, Su, Yapeng, Gardner, Louis, Yuan, Dan, Chen, Daniel, Goldman, Jason, Rosenstiel, Philipp, Schmidt, Susanne V., Latz, Eicke, Hrusovsky, Kevin, Ball, Andrew J., Johnson, Joe M., Koenig, Paul-Albert, Schmidt, Florian I., Haniffa, Muzlifah, Heath, James R., Kümmerer, Beate M., Keitel, Verena, Jensen, Björn, Stubbemann, Paula, Kurth, Florian, Sander, Leif E., Sawitzki, Birgit, Aschenbrenner, Anna C., Schultze, Joachim L., Nattermann, Jacob
Foilsithe / Cruthaithe 2021

Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients

de réir Aschenbrenner, Anna C., Mouktaroudi, Maria, Krämer, Benjamin, Oestreich, Marie, Antonakos, Nikolaos, Nuesch-Germano, Melanie, Gkizeli, Konstantina, Bonaguro, Lorenzo, Reusch, Nico, Baßler, Kevin, Saridaki, Maria, Knoll, Rainer, Pecht, Tal, Kapellos, Theodore S., Doulou, Sarandia, Kröger, Charlotte, Herbert, Miriam, Holsten, Lisa, Horne, Arik, Gemünd, Ioanna D., Rovina, Nikoletta, Agrawal, Shobhit, Dahm, Kilian, van Uelft, Martina, Drews, Anna, Lenkeit, Lena, Bruse, Niklas, Gerretsen, Jelle, Gierlich, Jannik, Becker, Matthias, Händler, Kristian, Kraut, Michael, Theis, Heidi, Mengiste, Simachew, De Domenico, Elena, Schulte-Schrepping, Jonas, Seep, Lea, Raabe, Jan, Hoffmeister, Christoph, ToVinh, Michael, Keitel, Verena, Rieke, Gereon, Talevi, Valentina, Skowasch, Dirk, Aziz, N. Ahmad, Pickkers, Peter, van de Veerdonk, Frank L., Netea, Mihai G., Schultze, Joachim L., Kox, Matthijs, Breteler, Monique M. B., Nattermann, Jacob, Koutsoukou, Antonia, Giamarellos-Bourboulis, Evangelos J., Ulas, Thomas
Foilsithe / Cruthaithe 2021

Swarm Learning for decentralized and confidential clinical machine learning

de réir Warnat-Herresthal, Stefanie, Schultze, Hartmut, Shastry, Krishnaprasad Lingadahalli, Manamohan, Sathyanarayanan, Mukherjee, Saikat, Garg, Vishesh, Sarveswara, Ravi, Händler, Kristian, Pickkers, Peter, Aziz, N. Ahmad, Ktena, Sofia, Tran, Florian, Bitzer, Michael, Ossowski, Stephan, Casadei, Nicolas, Herr, Christian, Petersheim, Daniel, Behrends, Uta, Kern, Fabian, Fehlmann, Tobias, Schommers, Philipp, Lehmann, Clara, Augustin, Max, Rybniker, Jan, Altmüller, Janine, Mishra, Neha, Bernardes, Joana P., Krämer, Benjamin, Bonaguro, Lorenzo, Schulte-Schrepping, Jonas, De Domenico, Elena, Siever, Christian, Kraut, Michael, Desai, Milind, Monnet, Bruno, Saridaki, Maria, Siegel, Charles Martin, Drews, Anna, Nuesch-Germano, Melanie, Theis, Heidi, Heyckendorf, Jan, Schreiber, Stefan, Kim-Hellmuth, Sarah, Nattermann, Jacob, Skowasch, Dirk, Kurth, Ingo, Keller, Andreas, Bals, Robert, Nürnberg, Peter, Rieß, Olaf, Rosenstiel, Philip, Netea, Mihai G., Theis, Fabian, Mukherjee, Sach, Backes, Michael, Aschenbrenner, Anna C., Ulas, Thomas, Breteler, Monique M. B., Giamarellos-Bourboulis, Evangelos J., Kox, Matthijs, Becker, Matthias, Cheran, Sorin, Woodacre, Michael S., Goh, Eng Lim, Schultze, Joachim L.
Foilsithe / Cruthaithe 2021

Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment

de réir Schulte-Schrepping, Jonas, Reusch, Nico, Paclik, Daniela, Baßler, Kevin, Schlickeiser, Stephan, Zhang, Bowen, Krämer, Benjamin, Krammer, Tobias, Brumhard, Sophia, Bonaguro, Lorenzo, De Domenico, Elena, Wendisch, Daniel, Grasshoff, Martin, Kapellos, Theodore S., Beckstette, Michael, Pecht, Tal, Saglam, Adem, Dietrich, Oliver, Mei, Henrik E., Schulz, Axel R., Conrad, Claudia, Kunkel, Désirée, Vafadarnejad, Ehsan, Xu, Cheng-Jian, Horne, Arik, Herbert, Miriam, Drews, Anna, Thibeault, Charlotte, Pfeiffer, Moritz, Hippenstiel, Stefan, Hocke, Andreas, Müller-Redetzky, Holger, Heim, Katrin-Moira, Machleidt, Felix, Uhrig, Alexander, Bosquillon de Jarcy, Laure, Jürgens, Linda, Stegemann, Miriam, Glösenkamp, Christoph R., Volk, Hans-Dieter, Goffinet, Christine, Landthaler, Markus, Wyler, Emanuel, Georg, Philipp, Schneider, Maria, Dang-Heine, Chantip, Neuwinger, Nick, Kappert, Kai, Tauber, Rudolf, Corman, Victor, Raabe, Jan, Kaiser, Kim Melanie, Vinh, Michael To, Rieke, Gereon, Meisel, Christian, Ulas, Thomas, Becker, Matthias, Geffers, Robert, Witzenrath, Martin, Drosten, Christian, Suttorp, Norbert, von Kalle, Christof, Kurth, Florian, Händler, Kristian, Schultze, Joachim L., Aschenbrenner, Anna C., Li, Yang, Nattermann, Jacob, Sawitzki, Birgit, Saliba, Antoine-Emmanuel, Sander, Leif Erik
Foilsithe / Cruthaithe 2020