Recent advances in functional genome analysis

por Guigo, Roderic, de Hoon, Michiel
Publicado 2018

Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes

por Makita, Yuko, de Hoon, Michiel JL, Danchin, Antoine
Publicado 2007

Paradigm shifts in genomics through the FANTOM projects

por de Hoon, Michiel, Shin, Jay W., Carninci, Piero
Publicado 2015

DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information

por Sierro, Nicolas, Makita, Yuko, de Hoon, Michiel, Nakai, Kenta
Publicado 2008

Prediction of Transcriptional Terminators in Bacillus subtilis and Related Species

por de Hoon, Michiel J. L., Makita, Yuko, Nakai, Kenta, Miyano, Satoru
Publicado 2005

Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation

por Harbers, Matthias, Kato, Sachi, de Hoon, Michiel, Hayashizaki, Yoshihide, Carninci, Piero, Plessy, Charles
Publicado 2013

A framework for identification of on- and off-target transcriptional responses to drug treatment

por Huang, Yi, Furuno, Masaaki, Arakawa, Takahiro, Takizawa, Satoshi, de Hoon, Michiel, Suzuki, Harukazu, Arner, Erik
Publicado 2019

Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment

por Rapakoulia, Trisevgeni, Gao, Xin, Huang, Yi, de Hoon, Michiel, Okada-Hatakeyama, Mariko, Suzuki, Harukazu, Arner, Erik
Publicado 2017

ZENBU-Reports: a graphical web-portal builder for interactive visualization and dissemination of genome-scale data

por Severin, Jessica, Agrawal, Saumya, Ramilowski, Jordan A, Deviatiiarov, Ruslan, Shin, Jay W, Carninci, Piero, de Hoon, Michiel
Publicado 2023

MicroRNA-27a/b-3p and PPARG regulate SCAMP3 through a feed-forward loop during adipogenesis

por Kulyté, Agné, Kwok, Kelvin Ho Man, de Hoon, Michiel, Carninci, Piero, Hayashizaki, Yoshihide, Arner, Peter, Arner, Erik
Publicado 2019

Multiplicity of 5′ Cap Structures Present on Short RNAs

por Abdelhamid, Rehab F., Plessy, Charles, Yamauchi, Yoshio, Taoka, Masato, de Hoon, Michiel, Gingeras, Thomas R., Isobe, Toshiaki, Carninci, Piero
Publicado 2014

HER2-encoded mir-4728 forms a receptor-independent circuit with miR-21-5p through the non-canonical poly(A) polymerase PAPD5

por Newie, Inga, Søkilde, Rolf, Persson, Helena, Jacomasso, Thiago, Gorbatenko, Andrej, Borg, Åke, de Hoon, Michiel, Pedersen, Stine F., Rovira, Carlos
Publicado 2016

Temporal dynamics and transcriptional control using single-cell gene expression analysis

por Kouno, Tsukasa, de Hoon, Michiel, Mar, Jessica C, Tomaru, Yasuhiro, Kawano, Mitsuoki, Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Shin, Jay W
Publicado 2013

Site-specific DICER and DROSHA RNA products control the DNA damage response

por Francia, Sofia, Michelini, Flavia, Saxena, Alka, Tang, Dave, de Hoon, Michiel, Anelli, Viviana, Mione, Marina, Carninci, Piero, d’Adda di Fagagna, Fabrizio
Publicado 2012

Edesign: Primer and Enhanced Internal Probe Design Tool for Quantitative PCR Experiments and Genotyping Assays

por Kimura, Yasumasa, Soma, Takahiro, Kasahara, Naoko, Delobel, Diane, Hanami, Takeshi, Tanaka, Yuki, de Hoon, Michiel J. L., Hayashizaki, Yoshihide, Usui, Kengo, Harbers, Matthias
Publicado 2016

Optimization of turn-back primers in isothermal amplification

por Kimura, Yasumasa, de Hoon, Michiel J. L., Aoki, Shintaro, Ishizu, Yuri, Kawai, Yuki, Kogo, Yasushi, Daub, Carsten O., Lezhava, Alexander, Arner, Erik, Hayashizaki, Yoshihide
Publicado 2011

Promoter Usage and Dynamics in Vascular Smooth Muscle Cells Exposed to Fibroblast Growth Factor-2 or Interleukin-1β

por Alhendi, Ahmad M. N., Patrikakis, Margaret, Daub, Carsten O., Kawaji, Hideya, Itoh, Masayoshi, de Hoon, Michiel, Carninci, Piero, Hayashizaki, Yoshihide, Arner, Erik, Khachigian, Levon M.
Publicado 2018

Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions

por Davis, Margaret R., Andersson, Robin, Severin, Jessica, de Hoon, Michiel, Bertin, Nicolas, Baillie, J. Kenneth, Kawaji, Hideya, Sandelin, Albin, Forrest, Alistair R.R., Summers, Kim M.
Publicado 2014

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

por Lizio, Marina, Abugessaisa, Imad, Noguchi, Shuhei, Kondo, Atsushi, Hasegawa, Akira, Hon, Chung Chau, de Hoon, Michiel, Severin, Jessica, Oki, Shinya, Hayashizaki, Yoshihide, Carninci, Piero, Kasukawa, Takeya, Kawaji, Hideya
Publicado 2019

Biopython: freely available Python tools for computational molecular biology and bioinformatics

por Cock, Peter J. A., Antao, Tiago, Chang, Jeffrey T., Chapman, Brad A., Cox, Cymon J., Dalke, Andrew, Friedberg, Iddo, Hamelryck, Thomas, Kauff, Frank, Wilczynski, Bartek, de Hoon, Michiel J. L.
Publicado 2009