MicroRNA-mediated host defense mechanisms against pathogens and herbivores in rice: balancing gains from genetic resistance with trade-offs to productivity potential

por Kumar, Kishor, Mandal, Swarupa Nanda, Neelam, Kumari, de los Reyes, Benildo G.
Publicado 2022

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data

por Zhang, Yuji, Xuan, Jianhua, de los Reyes, Benildo G, Clarke, Robert, Ressom, Habtom W
Publicado 2008

Reverse engineering module networks by PSO-RNN hybrid modeling

por Zhang, Yuji, Xuan, Jianhua, de los Reyes, Benildo G, Clarke, Robert, Ressom, Habtom W
Publicado 2009

Reconstruction of Gene Regulatory Modules in Cancer Cell Cycle by Multi-Source Data Integration

por Zhang, Yuji, Xuan, Jianhua, de los Reyes, Benildo G., Clarke, Robert, Ressom, Habtom W.
Publicado 2010

Simultaneous Colorimetric Detection of a Variety of Salmonella spp. in Food and Environmental Samples by Optical Biosensing Using Oligonucleotide-Gold Nanoparticles

por Quintela, Irwin A., de los Reyes, Benildo G., Lin, Chih-Sheng, Wu, Vivian C. H.
Publicado 2019

Novel allelic variation in the Phospholipase D alpha1 gene (OsPLDα1) of wild Oryza species implies to its low expression in rice bran

por Kaur, Amandeep, Neelam, Kumari, Kaur, Karminderbir, Kitazumi, Ai, de los Reyes, Benildo G., Singh, Kuldeep
Publicado 2020

Metagenomic investigation reveals bacteriophage-mediated horizontal transfer of antibiotic resistance genes in microbial communities of an organic agricultural ecosystem

por Zhang, Yujie, Kitazumi, Ai, Liao, Yen-Te, de los Reyes, Benildo G., Wu, Vivian C. H.
Publicado 2023

Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining

por de los Reyes, Benildo G, Mohanty, Bijayalaxmi, Yun, Song Joong, Park, Myoung-Ryoul, Lee, Dong-Yup
Publicado 2015

Transcriptional regulatory mechanism of alcohol dehydrogenase 1-deficient mutant of rice for cell survival under complete submergence

por Mohanty, Bijayalaxmi, Takahashi, Hirokazu, de los Reyes, Benildo G., Wijaya, Edward, Nakazono, Mikio, Lee, Dong-Yup
Publicado 2016

Contributions of Adaptive Plant Architecture to Transgressive Salinity Tolerance in Recombinant Inbred Lines of Rice: Molecular Mechanisms Based on Transcriptional Networks

por Pabuayon, Isaiah Catalino M., Kitazumi, Ai, Gregorio, Glenn B., Singh, Rakesh Kumar, de los Reyes, Benildo G.
Publicado 2020

Networks of Physiological Adjustments and Defenses, and Their Synergy With Sodium (Na(+)) Homeostasis Explain the Hidden Variation for Salinity Tolerance Across the Cultivated Goss...

por Cushman, Kevin R., Pabuayon, Isaiah C. M., Hinze, Lori L., Sweeney, Megan E., de los Reyes, Benildo G.
Publicado 2020

Novel genes and alleles of the BTB/POZ protein family in Oryza rufipogon

por Mandal, Swarupa Nanda, Sanchez, Jacobo, Bhowmick, Rakesh, Bello, Oluwatobi R., Van-Beek, Coenraad R., de los Reyes, Benildo G.
Publicado 2023

Cis-regulatory signatures of orthologous stress-associated bZIP transcription factors from rice, sorghum and Arabidopsis based on phylogenetic footprints

por Xu, Fuyu, Park, Myoung-Ryoul, Kitazumi, Ai, Herath, Venura, Mohanty, Bijayalaxmi, Yun, Song Joong, de los Reyes, Benildo G
Publicado 2012

Applicability of hyperspectral imaging during salinity stress in rice for tracking Na(+) and K(+) levels in planta

por Pabuayon, Isaiah Catalino M., Pabuayon, Irish Lorraine B., Singh, Rakesh Kumar, Ritchie, Glen L., de los Reyes, Benildo G.
Publicado 2022

Xenobiotic Effects of Chlorine Dioxide to Escherichia coli O157:H7 on Non-host Tomato Environment Revealed by Transcriptional Network Modeling: Implications to Adaptation and Selec...

por Shu, Xiaomei, Singh, Manavi, Karampudi, Naga Bhushana Rao, Bridges, David F., Kitazumi, Ai, Wu, Vivian C. H., De los Reyes, Benildo G.
Publicado 2020

Responses of Escherichia coli and Listeria monocytogenes to ozone treatment on non-host tomato: Efficacy of intervention and evidence of induced acclimation

por Shu, Xiaomei, Singh, Manavi, Karampudi, Naga Bhushana Rao, Bridges, David F., Kitazumi, Ai, Wu, Vivian C. H., De los Reyes, Benildo G.
Publicado 2021

An early response regulatory cluster induced by low temperature and hydrogen peroxide in seedlings of chilling-tolerant japonica rice

por Cheng, Chen, Yun, Kil-Young, Ressom, Habtom W, Mohanty, Bijayalaxmi, Bajic, Vladimir B, Jia, Yulin, Yun, Song Joong, de los Reyes, Benildo G
Publicado 2007

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

por Yun, Kil-Young, Park, Myoung Ryoul, Mohanty, Bijayalaxmi, Herath, Venura, Xu, Fuyu, Mauleon, Ramil, Wijaya, Edward, Bajic, Vladimir B, Bruskiewich, Richard, de los Reyes, Benildo G
Publicado 2010

Novel and Transgressive Salinity Tolerance in Recombinant Inbred Lines of Rice Created by Physiological Coupling-Uncoupling and Network Rewiring Effects

por Pabuayon, Isaiah C. M., Kitazumi, Ai, Cushman, Kevin R., Singh, Rakesh Kumar, Gregorio, Glenn B., Dhatt, Balpreet, Zabet-Moghaddam, Masoud, Walia, Harkamal, de los Reyes, Benildo G.
Publicado 2021

Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation

por Kitazumi, Ai, Pabuayon, Isaiah C. M., Ohyanagi, Hajime, Fujita, Masahiro, Osti, Bipush, Shenton, Matthew R., Kakei, Yusuke, Nakamura, Yasukazu, Brar, Darshan S., Kurata, Nori, de los Reyes, Benildo G.
Publicado 2018