Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

por Liu, Zongzhi, DeSantis, Todd Z., Andersen, Gary L., Knight, Rob
Publicado 2008

New Perspectives on Microbial Community Distortion after Whole-Genome Amplification

por Probst, Alexander J., Weinmaier, Thomas, DeSantis, Todd Z., Santo Domingo, Jorge W., Ashbolt, Nicholas
Publicado 2015

Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool

por Dalevi, Daniel, DeSantis, Todd Z, Fredslund, Jakob, Andersen, Gary L, Markowitz, Victor M, Hugenholtz, Philip
Publicado 2007

PyNAST: a flexible tool for aligning sequences to a template alignment

por Caporaso, J. Gregory, Bittinger, Kyle, Bushman, Frederic D., DeSantis, Todd Z., Andersen, Gary L., Knight, Rob
Publicado 2010

Comparing Bacterial Community Composition of Healthy and Dark Spot-Affected Siderastrea siderea in Florida and the Caribbean

por Kellogg, Christina A., Piceno, Yvette M., Tom, Lauren M., DeSantis, Todd Z., Gray, Michael A., Andersen, Gary L.
Publicado 2014

Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

por Iwai, Shoko, Weinmaier, Thomas, Schmidt, Brian L., Albertson, Donna G., Poloso, Neil J., Dabbagh, Karim, DeSantis, Todd Z.
Publicado 2016

StrainSelect: A novel microbiome reference database that disambiguates all bacterial strains, genome assemblies and extant cultures worldwide

por DeSantis, Todd Z., Cardona, Cesar, Narayan, Nicole R., Viswanatham, Satish, Ravichandar, Divya, Wee, Brendan, Chow, Cheryl-Emiliane, Iwai, Shoko
Publicado 2023

Comparing Bacterial Community Composition between Healthy and White Plague-Like Disease States in Orbicella annularis Using PhyloChip™ G3 Microarrays

por Kellogg, Christina A., Piceno, Yvette M., Tom, Lauren M., DeSantis, Todd Z., Gray, Michael A., Zawada, David G., Andersen, Gary L.
Publicado 2013

Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences

por Narayan, Nicole R., Weinmaier, Thomas, Laserna-Mendieta, Emilio J., Claesson, Marcus J., Shanahan, Fergus, Dabbagh, Karim, Iwai, Shoko, DeSantis, Todd Z.
Publicado 2020

Correction to: Piphillin predicts metagenomic composition and dynamics from DADA2- corrected 16S rDNA sequences

por Narayan, Nicole R., Weinmaier, Thomas, Laserna-Mendieta, Emilio J., Claesson, Marcus J., Shanahan, Fergus, Dabbagh, Karim, Iwai, Shoko, DeSantis, Todd Z.
Publicado 2020

Topic modeling for multi-omic integration in the human gut microbiome and implications for Autism

por Tataru, Christine, Peras, Marie, Rutherford, Erica, Dunlap, Kaiti, Yin, Xiaochen, Chrisman, Brianna S., DeSantis, Todd Z., Wall, Dennis P., Iwai, Shoko, David, Maude M.
Publicado 2023

Simrank: Rapid and sensitive general-purpose k-mer search tool

por DeSantis, Todd Z, Keller, Keith, Karaoz, Ulas, Alekseyenko, Alexander V, Singh, Navjeet NS, Brodie, Eoin L, Pei, Zhiheng, Andersen, Gary L, Larsen, Niels
Publicado 2011

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

por McDonald, Daniel, Price, Morgan N, Goodrich, Julia, Nawrocki, Eric P, DeSantis, Todd Z, Probst, Alexander, Andersen, Gary L, Knight, Rob, Hugenholtz, Philip
Publicado 2012

Truffle Brûlés Have an Impact on the Diversity of Soil Bacterial Communities

por Mello, Antonietta, Ding, Guo-Chun, Piceno, Yvette M., Napoli, Chiara, Tom, Lauren M., DeSantis, Todd Z., Andersen, Gary L., Smalla, Kornelia, Bonfante, Paola
Publicado 2013

A Comparative Evaluation of Tools to Predict Metabolite Profiles From Microbiome Sequencing Data

por Yin, Xiaochen, Altman, Tomer, Rutherford, Erica, West, Kiana A., Wu, Yonggan, Choi, Jinlyung, Beck, Paul L., Kaplan, Gilaad G., Dabbagh, Karim, DeSantis, Todd Z., Iwai, Shoko
Publicado 2020

Characterization of Coastal Urban Watershed Bacterial Communities Leads to Alternative Community-Based Indicators

por Wu, Cindy H., Sercu, Bram, Van De Werfhorst, Laurie C., Wong, Jakk, DeSantis, Todd Z., Brodie, Eoin L., Hazen, Terry C., Holden, Patricia A., Andersen, Gary L.
Publicado 2010

Improved detection of disease-associated gut microbes using 16S sequence-based biomarkers

por Chrisman, Brianna S., Paskov, Kelley M., Stockham, Nate, Jung, Jae-Yoon, Varma, Maya, Washington, Peter Y., Tataru, Christine, Iwai, Shoko, DeSantis, Todd Z., David, Maude, Wall, Dennis P.
Publicado 2021

The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing

por Fodor, Anthony A., DeSantis, Todd Z., Wylie, Kristine M., Badger, Jonathan H., Ye, Yuzhen, Hepburn, Theresa, Hu, Ping, Sodergren, Erica, Liolios, Konstantinos, Huot-Creasy, Heather, Birren, Bruce W., Earl, Ashlee M.
Publicado 2012

Strain level and comprehensive microbiome analysis in inflammatory bowel disease via multi-technology meta-analysis identifies key bacterial influencers of disease

por Ravichandar, Jayamary Divya, Rutherford, Erica, Chow, Cheryl-Emiliane T., Han, Andrew, Yamamoto, Mitsuko Lynn, Narayan, Nicole, Kaplan, Gilaad G., Beck, Paul L., Claesson, Marcus J., Dabbagh, Karim, Iwai, Shoko, DeSantis, Todd Z.
Publicado 2022

Coupling Genetic and Chemical Microbiome Profiling Reveals Heterogeneity of Archaeome and Bacteriome in Subsurface Biofilms That Are Dominated by the Same Archaeal Species

por Probst, Alexander J., Birarda, Giovanni, Holman, Hoi-Ying N., DeSantis, Todd Z., Wanner, Gerhard, Andersen, Gary L., Perras, Alexandra K., Meck, Sandra, Völkel, Jörg, Bechtel, Hans A., Wirth, Reinhard, Moissl-Eichinger, Christine
Publicado 2014