Recovering false negatives in CRISPR fitness screens with JLOE

por Dede, Merve, Hart, Traver
Publicado 2023

Multiplex enCas12a screens detect functional buffering among paralogs otherwise masked in monogenic Cas9 knockout screens

por Dede, Merve, McLaughlin, Megan, Kim, Eiru, Hart, Traver
Publicado 2020

A network of human functional gene interactions from knockout fitness screens in cancer cells

por Kim, Eiru, Dede, Merve, Lenoir, Walter F, Wang, Gang, Srinivasan, Sanjana, Colic, Medina, Hart, Traver
Publicado 2019

Characterizing cancer metabolism from bulk and single-cell RNA-seq data using METAFlux

por Huang, Yuefan, Mohanty, Vakul, Dede, Merve, Tsai, Kyle, Daher, May, Li, Li, Rezvani, Katayoun, Chen, Ken
Publicado 2023

RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing data

por Movassagh, Mercedeh, Alomran, Nawaf, Mudvari, Prakriti, Dede, Merve, Dede, Cem, Kowsari, Kamran, Restrepo, Paula, Cauley, Edmund, Bahl, Sonali, Li, Muzi, Waterhouse, Wesley, Tsaneva-Atanasova, Krasimira, Edwards, Nathan, Horvath, Anelia
Publicado 2016

Discovery of putative tumor suppressors from CRISPR screens reveals rewired lipid metabolism in acute myeloid leukemia cells

por Lenoir, W. Frank, Morgado, Micaela, DeWeirdt, Peter C., McLaughlin, Megan, Griffith, Audrey L., Sangree, Annabel K., Feeley, Marissa N., Esmaeili Anvar, Nazanin, Kim, Eiru, Bertolet, Lori L., Colic, Medina, Dede, Merve, Doench, John G., Hart, Traver
Publicado 2021

Genome-wide CRISPR screens using isogenic cells reveal vulnerabilities conferred by loss of tumor suppressors

por Feng, Xu, Tang, Mengfan, Dede, Merve, Su, Dan, Pei, Guangsheng, Jiang, Dadi, Wang, Chao, Chen, Zhen, Li, Mi, Nie, Litong, Xiong, Yun, Li, Siting, Park, Jeong-Min, Zhang, Huimin, Huang, Min, Szymonowicz, Klaudia, Zhao, Zhongming, Hart, Traver, Chen, Junjie
Publicado 2022