A16 A distributed pan-viral typing framework

Bằng Vilsker, Michael, Deforche, Koen
Được phát hành 2017

Behavioral changes before lockdown and decreased retail and recreation mobility during lockdown contributed most to controlling COVID-19 in Western countries

Bằng Deforche, Koen, Vercauteren, Jurgen, Müller, Viktor, Vandamme, Anne-Mieke
Được phát hành 2021

VIRULIGN: fast codon-correct alignment and annotation of viral genomes

Bằng Libin, Pieter J K, Deforche, Koen, Abecasis, Ana B, Theys, Kristof
Được phát hành 2019

A34 Automated profiling of the human virome from raw metagenomic data

Bằng Moosa, Yumna, Vilsker, Michael, Vanden Eyden, Ewout, Fonseca, Vagner, Nooij, Sam, Deforche, Koen, de Oliveira, Tulio
Được phát hành 2017

SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination

Bằng Jariani, Abbas, Warth, Christopher, Deforche, Koen, Libin, Pieter, Drummond, Alexei J, Rambaut, Andrew, Matsen IV, Frederick A, Theys, Kristof
Được phát hành 2019

Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes

Bằng Cleemput, Sara, Dumon, Wim, Fonseca, Vagner, Abdool Karim, Wasim, Giovanetti, Marta, Alcantara, Luiz Carlos, Deforche, Koen, de Oliveira, Tulio
Được phát hành 2020

Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes

Bằng Cleemput, Sara, Dumon, Wim, Fonseca, Vagner, Karim, Wasim Abdool, Giovanetti, Marta, Alcantara, Luiz Carlos, Deforche, Koen, de Oliveira, Tulio
Được phát hành 2020

HIV-1 gp120 N-linked glycosylation differs between plasma and leukocyte compartments

Bằng Ho, Yung Shwen, Abecasis, Ana B, Theys, Kristof, Deforche, Koen, Dwyer, Dominic E, Charleston, Michael, Vandamme, Anne Mieke, Saksena, Nitin K
Được phát hành 2008

Development of HTLV-1 Database for data management and datamining HTLV-1 sequences

Bằng Araujo, Thessika H A, Souza-Brito, Leandro I, Libin, Pieter, Vandamme, Anne-Mieke, Deforche, Koen, Galvao-Castro, Bernardo, Alcantara, Luiz C
Được phát hành 2011

The incidence of multidrug and full class resistance in HIV-1 infected patients is decreasing over time (2001–2006) in Portugal

Bằng Vercauteren, Jurgen, Deforche, Koen, Theys, Kristof, Debruyne, Michiel, Duque, Luis Miguel, Peres, Susana, Carvalho, Ana Patricia, Mansinho, Kamal, Vandamme, Anne-Mieke, Camacho, Ricardo
Được phát hành 2008

A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences

Bằng Alcantara, Luiz Carlos Junior, Cassol, Sharon, Libin, Pieter, Deforche, Koen, Pybus, Oliver G., Van Ranst, Marc, Galvão-Castro, Bernardo, Vandamme, Anne-Mieke, de Oliveira, Tulio
Được phát hành 2009

Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape

Bằng Theys, Kristof, Deforche, Koen, Beheydt, Gertjan, Moreau, Yves, van Laethem, Kristel, Lemey, Philippe, Camacho, Ricardo J, Rhee, Soo-Yon, Shafer, Robert W, Van Wijngaerden, Eric, Vandamme, Anne-Mieke
Được phát hành 2010

APOBEC3G-Induced Hypermutation of Human Immunodeficiency Virus Type-1 Is Typically a Discrete “All or Nothing” Phenomenon

Bằng Armitage, Andrew E., Deforche, Koen, Chang, Chih-hao, Wee, Edmund, Kramer, Beatrice, Welch, John J., Gerstoft, Jan, Fugger, Lars, McMichael, Andrew, Rambaut, Andrew, Iversen, Astrid K. N.
Được phát hành 2012

Genome Detective: an automated system for virus identification from high-throughput sequencing data

Bằng Vilsker, Michael, Moosa, Yumna, Nooij, Sam, Fonseca, Vagner, Ghysens, Yoika, Dumon, Korneel, Pauwels, Raf, Alcantara, Luiz Carlos, Vanden Eynden, Ewout, Vandamme, Anne-Mieke, Deforche, Koen, de Oliveira, Tulio
Được phát hành 2019

A Public HTLV-1 Molecular Epidemiology Database for Sequence Management and Data Mining

Bằng Araujo, Thessika Hialla Almeida, Souza-Brito, Leandro Inacio, Libin, Pieter, Deforche, Koen, Edwards, Dustin, de Albuquerque-Junior, Antonio Eduardo, Vandamme, Anne-Mieke, Galvao-Castro, Bernardo, Alcantara, Luiz Carlos Junior
Được phát hành 2012

A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes

Bằng Fonseca, Vagner, Libin, Pieter J. K., Theys, Kristof, Faria, Nuno R., Nunes, Marcio R. T., Restovic, Maria I., Freire, Murilo, Giovanetti, Marta, Cuypers, Lize, Nowé, Ann, Abecasis, Ana, Deforche, Koen, Santiago, Gilberto A., de Siqueira, Isadora C., San, Emmanuel J., Machado, Kaliane C. B., Azevedo, Vasco, Filippis, Ana Maria Bispo-de, da Cunha, Rivaldo Venâncio, Pybus, Oliver G., Vandamme, Anne-Mieke, Alcantara, Luiz C. J., de Oliveira, Tulio
Được phát hành 2019

RegaDB: community-driven data management and analysis for infectious diseases

Bằng Libin, Pieter, Beheydt, Gertjan, Deforche, Koen, Imbrechts, Stijn, Ferreira, Fossie, Van Laethem, Kristel, Theys, Kristof, Carvalho, Ana Patricia, Cavaco-Silva, Joana, Lapadula, Giuseppe, Torti, Carlo, Assel, Matthias, Wesner, Stefan, Snoeck, Joke, Ruelle, Jean, De Bel, Annelies, Lacor, Patrick, De Munter, Paul, Van Wijngaerden, Eric, Zazzi, Maurizio, Kaiser, Rolf, Ayouba, Ahidjo, Peeters, Martine, de Oliveira, Tulio, Alcantara, Luiz C. J., Grossman, Zehava, Sloot, Peter, Otelea, Dan, Paraschiv, Simona, Boucher, Charles, Camacho, Ricardo J., Vandamme, Anne-Mieke
Được phát hành 2013

Treatment-associated polymorphisms in protease are significantly associated with higher viral load and lower CD4 count in newly diagnosed drug-naive HIV-1 infected patients

Bằng Theys, Kristof, Deforche, Koen, Vercauteren, Jurgen, Libin, Pieter, van de Vijver, David AMC, Albert, Jan, Åsjö, Birgitta, Balotta, Claudia, Bruckova, Marie, Camacho, Ricardo J, Clotet, Bonaventura, Coughlan, Suzie, Grossman, Zehava, Hamouda, Osamah, Horban, Andrzei, Korn, Klaus, Kostrikis, Leondios G, Kücherer, Claudia, Nielsen, Claus, Paraskevis, Dimitrios, Poljak, Mario, Puchhammer-Stockl, Elisabeth, Riva, Chiara, Ruiz, Lidia, Liitsola, Kirsi, Schmit, Jean-Claude, Schuurman, Rob, Sönnerborg, Anders, Stanekova, Danica, Stanojevic, Maja, Struck, Daniel, Van Laethem, Kristel, Wensing, Annemarie MJ, Boucher, Charles AB, Vandamme, Anne-Mieke
Được phát hành 2012

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

Bằng Viana, Raquel, Moyo, Sikhulile, Amoako, Daniel G., Tegally, Houriiyah, Scheepers, Cathrine, Althaus, Christian L., Anyaneji, Ugochukwu J., Bester, Phillip A., Boni, Maciej F., Chand, Mohammed, Choga, Wonderful T., Colquhoun, Rachel, Davids, Michaela, Deforche, Koen, Doolabh, Deelan, du Plessis, Louis, Engelbrecht, Susan, Everatt, Josie, Giandhari, Jennifer, Giovanetti, Marta, Hardie, Diana, Hill, Verity, Hsiao, Nei-Yuan, Iranzadeh, Arash, Ismail, Arshad, Joseph, Charity, Joseph, Rageema, Koopile, Legodile, Kosakovsky Pond, Sergei L., Kraemer, Moritz U. G., Kuate-Lere, Lesego, Laguda-Akingba, Oluwakemi, Lesetedi-Mafoko, Onalethatha, Lessells, Richard J., Lockman, Shahin, Lucaci, Alexander G., Maharaj, Arisha, Mahlangu, Boitshoko, Maponga, Tongai, Mahlakwane, Kamela, Makatini, Zinhle, Marais, Gert, Maruapula, Dorcas, Masupu, Kereng, Matshaba, Mogomotsi, Mayaphi, Simnikiwe, Mbhele, Nokuzola, Mbulawa, Mpaphi B., Mendes, Adriano, Mlisana, Koleka, Mnguni, Anele, Mohale, Thabo, Moir, Monika, Moruisi, Kgomotso, Mosepele, Mosepele, Motsatsi, Gerald, Motswaledi, Modisa S., Mphoyakgosi, Thongbotho, Msomi, Nokukhanya, Mwangi, Peter N., Naidoo, Yeshnee, Ntuli, Noxolo, Nyaga, Martin, Olubayo, Lucier, Pillay, Sureshnee, Radibe, Botshelo, Ramphal, Yajna, Ramphal, Upasana, San, James E., Scott, Lesley, Shapiro, Roger, Singh, Lavanya, Smith-Lawrence, Pamela, Stevens, Wendy, Strydom, Amy, Subramoney, Kathleen, Tebeila, Naume, Tshiabuila, Derek, Tsui, Joseph, van Wyk, Stephanie, Weaver, Steven, Wibmer, Constantinos K., Wilkinson, Eduan, Wolter, Nicole, Zarebski, Alexander E., Zuze, Boitumelo, Goedhals, Dominique, Preiser, Wolfgang, Treurnicht, Florette, Venter, Marietje, Williamson, Carolyn, Pybus, Oliver G., Bhiman, Jinal, Glass, Allison, Martin, Darren P., Rambaut, Andrew, Gaseitsiwe, Simani, von Gottberg, Anne, de Oliveira, Tulio
Được phát hành 2022