Two Rounds of Whole Genome Duplication in the Ancestral Vertebrate

por Dehal, Paramvir, Boore, Jeffrey L
Publicado 2005

A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database

por Dehal, Paramvir S, Boore, Jeffrey L
Publicado 2006

Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes

por Price, Morgan N, Dehal, Paramvir S, Arkin, Adam P
Publicado 2007

Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli

por Price, Morgan N, Dehal, Paramvir S, Arkin, Adam P
Publicado 2008

FastBLAST: Homology Relationships for Millions of Proteins

por Price, Morgan N., Dehal, Paramvir S., Arkin, Adam P.
Publicado 2008

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

por Price, Morgan N., Dehal, Paramvir S., Arkin, Adam P.
Publicado 2009

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

por Price, Morgan N., Dehal, Paramvir S., Arkin, Adam P.
Publicado 2010

metaMicrobesOnline: phylogenomic analysis of microbial communities

por Chivian, Dylan, Dehal, Paramvir S., Keller, Keith, Arkin, Adam P.
Publicado 2013

Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium

por Rajeev, Lara, Luning, Eric G, Dehal, Paramvir S, Price, Morgan N, Arkin, Adam P, Mukhopadhyay, Aindrila
Publicado 2011

RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics

por Novichkov, Pavel S., Brettin, Thomas S., Novichkova, Elena S., Dehal, Paramvir S., Arkin, Adam P., Dubchak, Inna, Rodionov, Dmitry A.
Publicado 2012

A universal TagModule collection for parallel genetic analysis of microorganisms

por Oh, Julia, Fung, Eula, Price, Morgan N., Dehal, Paramvir S., Davis, Ronald W., Giaever, Guri, Nislow, Corey, Arkin, Adam P., Deutschbauer, Adam
Publicado 2010

Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site

por Chakraborty, Romy, Woo, Hannah, Dehal, Paramvir, Walker, Robert, Zemla, Marcin, Auer, Manfred, Goodwin, Lynne A., Kazakov, Alexey, Novichkov, Pavel, Arkin, Adam P., Hazen, Terry C.
Publicado 2017

Snapshot of iron response in Shewanella oneidensis by gene network reconstruction

por Yang, Yunfeng, Harris, Daniel P, Luo, Feng, Xiong, Wenlu, Joachimiak, Marcin, Wu, Liyou, Dehal, Paramvir, Jacobsen, Janet, Yang, Zamin, Palumbo, Anthony V, Arkin, Adam P, Zhou, Jizhong
Publicado 2009

iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology

por Bolduc, Benjamin, Zablocki, Olivier, Guo, Jiarong, Zayed, Ahmed A., Vik, Dean, Dehal, Paramvir, Wood-Charlson, Elisha M., Arkin, Adam, Merchant, Nirav, Pett-Ridge, Jennifer, Roux, Simon, Vaughn, Matthew, Sullivan, Matthew B.
Publicado 2021

TreeFam: a curated database of phylogenetic trees of animal gene families

por Li, Heng, Coghlan, Avril, Ruan, Jue, Coin, Lachlan James, Hériché, Jean-Karim, Osmotherly, Lara, Li, Ruiqiang, Liu, Tao, Zhang, Zhang, Bolund, Lars, Wong, Gane Ka-Shu, Zheng, Weimou, Dehal, Paramvir, Wang, Jun, Durbin, Richard
Publicado 2006

MicrobesOnline: an integrated portal for comparative and functional genomics

por Dehal, Paramvir S., Joachimiak, Marcin P., Price, Morgan N., Bates, John T., Baumohl, Jason K., Chivian, Dylan, Friedland, Greg D., Huang, Katherine H., Keller, Keith, Novichkov, Pavel S., Dubchak, Inna L., Alm, Eric J., Arkin, Adam P.
Publicado 2010

High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwat...

por Ramsay, Bradley D., Hwang, Chiachi, Woo, Hannah L., Carroll, Sue L., Lucas, Susan, Han, James, Lapidus, Alla L., Cheng, Jan-Fang, Goodwin, Lynne A., Pitluck, Samuel, Peters, Lin, Chertkov, Olga, Held, Brittany, Detter, John C., Han, Cliff S., Tapia, Roxanne, Land, Miriam L., Hauser, Loren J., Kyrpides, Nikos C., Ivanova, Natalia N., Mikhailova, Natalia, Pagani, Ioanna, Woyke, Tanja, Arkin, Adam P., Dehal, Paramvir, Chivian, Dylan, Criddle, Craig S., Wu, Weimin, Chakraborty, Romy, Hazen, Terry C., Fields, Matthew W.
Publicado 2015

Author Correction: A genomic catalog of Earth’s microbiomes

por Nayfach, Stephen, Roux, Simon, Seshadri, Rekha, Udwary, Daniel, Varghese, Neha, Schulz, Frederik, Wu, Dongying, Paez-Espino, David, Chen, I-Min, Huntemann, Marcel, Palaniappan, Krishna, Ladau, Joshua, Mukherjee, Supratim, Reddy, T. B. K., Nielsen, Torben, Kirton, Edward, Faria, José P., Edirisinghe, Janaka N., Henry, Christopher S., Jungbluth, Sean P., Chivian, Dylan, Dehal, Paramvir, Wood-Charlson, Elisha M., Arkin, Adam P., Tringe, Susannah G., Visel, Axel, Woyke, Tanja, Mouncey, Nigel J., Ivanova, Natalia N., Kyrpides, Nikos C., Eloe-Fadrosh, Emiley A.
Publicado 2021

Publisher Correction: A genomic catalog of Earth’s microbiomes

por Nayfach, Stephen, Roux, Simon, Seshadri, Rekha, Udwary, Daniel, Varghese, Neha, Schulz, Frederik, Wu, Dongying, Paez-Espino, David, Chen, I-Min, Huntemann, Marcel, Palaniappan, Krishna, Ladau, Joshua, Mukherjee, Supratim, Reddy, T. B. K., Nielsen, Torben, Kirton, Edward, Faria, José P., Edirisinghe, Janaka N., Henry, Christopher S., Jungbluth, Sean P., Chivian, Dylan, Dehal, Paramvir, Wood-Charlson, Elisha M., Arkin, Adam P., Tringe, Susannah G., Visel, Axel, Woyke, Tanja, Mouncey, Nigel J., Ivanova, Natalia N., Kyrpides, Nikos C., Eloe-Fadrosh, Emiley A.
Publicado 2020

A genomic catalog of Earth’s microbiomes

por Nayfach, Stephen, Roux, Simon, Seshadri, Rekha, Udwary, Daniel, Varghese, Neha, Schulz, Frederik, Wu, Dongying, Paez-Espino, David, Chen, I-Min, Huntemann, Marcel, Palaniappan, Krishna, Ladau, Joshua, Mukherjee, Supratim, Reddy, T. B. K., Nielsen, Torben, Kirton, Edward, Faria, José P., Edirisinghe, Janaka N., Henry, Christopher S., Jungbluth, Sean P., Chivian, Dylan, Dehal, Paramvir, Wood-Charlson, Elisha M., Arkin, Adam P., Tringe, Susannah G., Visel, Axel, Woyke, Tanja, Mouncey, Nigel J., Ivanova, Natalia N., Kyrpides, Nikos C., Eloe-Fadrosh, Emiley A.
Publicado 2020