Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains : a web-based resource

por Denœud, France, Vergnaud, Gilles
Publicado 2004

High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing

por Le Flèche, Philippe, Fabre, Michel, Denoeud, France, Koeck, Jean-Louis, Vergnaud, Gilles
Publicado 2002

The complete plastome of Centaurium erythraea subsp. majus (Hoffmanns. & Link) M.Laínz (Gentianaceae), the first chloroplast genome belonging to the Centaurium genus

por Carvalho Leonardo, Inês, Alberti, Adriana, Denoeud, France, Barreto Crespo, Maria Teresa, Capelo, Jorge, Bustos Gaspar, Frédéric
Publicado 2023

The complete plastome of Glandora prostrata subsp. lusitanica (Samp.) D.C.Thomas (Boraginaceae), the first chloroplast genome belonging to the Glandora genus

por Carvalho Leonardo, Inês, Alberti, Adriana, Denoeud, France, Barreto Crespo, Maria Teresa, Capelo, Jorge, Bustos Gaspar, Frédéric
Publicado 2023

A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis

por Le Flèche, Philippe, Hauck, Yolande, Onteniente, Lucie, Prieur, Agnès, Denoeud, France, Ramisse, Vincent, Sylvestre, Patricia, Benson, Gary, Ramisse, Françoise, Vergnaud, Gilles
Publicado 2001

Evaluation and selection of tandem repeat loci for a Brucella MLVA typing assay

por Le Flèche, Philippe, Jacques, Isabelle, Grayon, Maggy, Al Dahouk, Sascha, Bouchon, Patrick, Denoeud, France, Nöckler, Karsten, Neubauer, Heinrich, Guilloteau, Laurence A, Vergnaud, Gilles
Publicado 2006

Annotating genomes with massive-scale RNA sequencing

por Denoeud, France, Aury, Jean-Marc, Da Silva, Corinne, Noel, Benjamin, Rogier, Odile, Delledonne, Massimo, Morgante, Michele, Valle, Giorgio, Wincker, Patrick, Scarpelli, Claude, Jaillon, Olivier, Artiguenave, François
Publicado 2008

Conservation and divergence of chemical defense system in the tunicate Oikopleura dioica revealed by genome wide response to two xenobiotics

por Yadetie, Fekadu, Butcher, Stephen, Førde, Hilde E, Campsteijn, Coen, Bouquet, Jean-Marie, Karlsen, Odd A, Denoeud, France, Metpally, Raghu, Thompson, Eric M, Manak, J Robert, Goksøyr, Anders, Chourrout, Daniel
Publicado 2012

GENCODE: producing a reference annotation for ENCODE

por Harrow, Jennifer, Denoeud, France, Frankish, Adam, Reymond, Alexandre, Chen, Chao-Kung, Chrast, Jacqueline, Lagarde, Julien, Gilbert, James GR, Storey, Roy, Swarbreck, David, Rossier, Colette, Ucla, Catherine, Hubbard, Tim, Antonarakis, Stylianos E, Guigo, Roderic
Publicado 2006

Tempo and drivers of plant diversification in the European mountain system

por Smyčka, Jan, Roquet, Cristina, Boleda, Martí, Alberti, Adriana, Boyer, Frédéric, Douzet, Rolland, Perrier, Christophe, Rome, Maxime, Valay, Jean-Gabriel, Denoeud, France, Šemberová, Kristýna, Zimmermann, Niklaus E., Thuiller, Wilfried, Wincker, Patrick, Alsos, Inger G., Coissac, Eric, Lavergne, Sébastien
Publicado 2022

The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material

por Alsos, Inger Greve, Lavergne, Sebastien, Merkel, Marie Kristine Føreid, Boleda, Marti, Lammers, Youri, Alberti, Adriana, Pouchon, Charles, Denoeud, France, Pitelkova, Iva, Pușcaș, Mihai, Roquet, Cristina, Hurdu, Bogdan-Iuliu, Thuiller, Wilfried, Zimmermann, Niklaus E., Hollingsworth, Peter M., Coissac, Eric
Publicado 2020

EGASP: the human ENCODE Genome Annotation Assessment Project

por Guigó, Roderic, Flicek, Paul, Abril, Josep F, Reymond, Alexandre, Lagarde, Julien, Denoeud, France, Antonarakis, Stylianos, Ashburner, Michael, Bajic, Vladimir B, Birney, Ewan, Castelo, Robert, Eyras, Eduardo, Ucla, Catherine, Gingeras, Thomas R, Harrow, Jennifer, Hubbard, Tim, Lewis, Suzanna E, Reese, Martin G
Publicado 2006

Postglacial species arrival and diversity buildup of northern ecosystems took millennia

por Alsos, Inger Greve, Rijal, Dilli Prasad, Ehrich, Dorothee, Karger, Dirk Nikolaus, Yoccoz, Nigel Gilles, Heintzman, Peter D., Brown, Antony G., Lammers, Youri, Pellissier, Loïc, Alm, Torbjørn, Bråthen, Kari Anne, Coissac, Eric, Merkel, Marie Kristine Føreid, Alberti, Adriana, Denoeud, France, Bakke, Jostein
Publicado 2022

Long-read assembly of the Brassica napus reference genome Darmor-bzh

por Rousseau-Gueutin, Mathieu, Belser, Caroline, Da Silva, Corinne, Richard, Gautier, Istace, Benjamin, Cruaud, Corinne, Falentin, Cyril, Boideau, Franz, Boutte, Julien, Delourme, Regine, Deniot, Gwenaëlle, Engelen, Stefan, de Carvalho, Julie Ferreira, Lemainque, Arnaud, Maillet, Loeiz, Morice, Jérôme, Wincker, Patrick, Denoeud, France, Chèvre, Anne-Marie, Aury, Jean-Marc
Publicado 2020

Efficient targeted transcript discovery via array-based normalization of RACE libraries

por Djebali, Sarah, Kapranov, Philipp, Foissac, Sylvain, Lagarde, Julien, Reymond, Alexandre, Ucla, Catherine, Wyss, Carine, Drenkow, Jorg, Dumais, Erica, Murray, Ryan R., Lin, Chenwei, Szeto, David, Denoeud, France, Calvo, Miquel, Frankish, Adam, Harrow, Jennifer, Makrythanasis, Periklis, Vidal, Marc, Salehi-Ashtiani, Kourosh, Antonarakis, Stylianos E., Gingeras, Thomas R., Guigó, Roderic
Publicado 2008

Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite

por Denoeud, France, Roussel, Michaël, Noel, Benjamin, Wawrzyniak, Ivan, Da Silva, Corinne, Diogon, Marie, Viscogliosi, Eric, Brochier-Armanet, Céline, Couloux, Arnaud, Poulain, Julie, Segurens, Béatrice, Anthouard, Véronique, Texier, Catherine, Blot, Nicolas, Poirier, Philippe, Ng, Geok Choo, Tan, Kevin SW, Artiguenave, François, Jaillon, Olivier, Aury, Jean-Marc, Delbac, Frédéric, Wincker, Patrick, Vivarès, Christian P, El Alaoui, Hicham
Publicado 2011

The Streamlined Genome of Phytomonas spp. Relative to Human Pathogenic Kinetoplastids Reveals a Parasite Tailored for Plants

por Porcel, Betina M., Denoeud, France, Opperdoes, Fred, Noel, Benjamin, Madoui, Mohammed-Amine, Hammarton, Tansy C., Field, Mark C., Da Silva, Corinne, Couloux, Arnaud, Poulain, Julie, Katinka, Michael, Jabbari, Kamel, Aury, Jean-Marc, Campbell, David A., Cintron, Roxana, Dickens, Nicholas J., Docampo, Roberto, Sturm, Nancy R., Koumandou, V. Lila, Fabre, Sandrine, Flegontov, Pavel, Lukeš, Julius, Michaeli, Shulamit, Mottram, Jeremy C., Szöőr, Balázs, Zilberstein, Dan, Bringaud, Frédéric, Wincker, Patrick, Dollet, Michel
Publicado 2014

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

por Parkin, Isobel AP, Koh, Chushin, Tang, Haibao, Robinson, Stephen J, Kagale, Sateesh, Clarke, Wayne E, Town, Chris D, Nixon, John, Krishnakumar, Vivek, Bidwell, Shelby L, Denoeud, France, Belcram, Harry, Links, Matthew G, Just, Jérémy, Clarke, Carling, Bender, Tricia, Huebert, Terry, Mason, Annaliese S, Pires, J Chris, Barker, Guy, Moore, Jonathan, Walley, Peter G, Manoli, Sahana, Batley, Jacqueline, Edwards, David, Nelson, Matthew N, Wang, Xiyin, Paterson, Andrew H, King, Graham, Bancroft, Ian, Chalhoub, Boulos, Sharpe, Andrew G
Publicado 2014

Pervasive tandem duplications and convergent evolution shape coral genomes

por Noel, Benjamin, Denoeud, France, Rouan, Alice, Buitrago-López, Carol, Capasso, Laura, Poulain, Julie, Boissin, Emilie, Pousse, Mélanie, Da Silva, Corinne, Couloux, Arnaud, Armstrong, Eric, Carradec, Quentin, Cruaud, Corinne, Labadie, Karine, Lê-Hoang, Julie, Tambutté, Sylvie, Barbe, Valérie, Moulin, Clémentine, Bourdin, Guillaume, Iwankow, Guillaume, Romac, Sarah, Agostini, Sylvain, Banaigs, Bernard, Boss, Emmanuel, Bowler, Chris, de Vargas, Colomban, Douville, Eric, Flores, J. Michel, Forcioli, Didier, Furla, Paola, Galand, Pierre E., Lombard, Fabien, Pesant, Stéphane, Reynaud, Stéphanie, Sullivan, Matthew B., Sunagawa, Shinichi, Thomas, Olivier P., Troublé, Romain, Thurber, Rebecca Vega, Allemand, Denis, Planes, Serge, Gilson, Eric, Zoccola, Didier, Wincker, Patrick, Voolstra, Christian R., Aury, Jean-Marc
Publicado 2023

Late Quaternary dynamics of Arctic biota from ancient environmental genomics

por Wang, Yucheng, Pedersen, Mikkel Winther, Alsos, Inger Greve, De Sanctis, Bianca, Racimo, Fernando, Prohaska, Ana, Coissac, Eric, Owens, Hannah Lois, Merkel, Marie Kristine Føreid, Fernandez-Guerra, Antonio, Rouillard, Alexandra, Lammers, Youri, Alberti, Adriana, Denoeud, France, Money, Daniel, Ruter, Anthony H., McColl, Hugh, Larsen, Nicolaj Krog, Cherezova, Anna A., Edwards, Mary E., Fedorov, Grigory B., Haile, James, Orlando, Ludovic, Vinner, Lasse, Korneliussen, Thorfinn Sand, Beilman, David W., Bjørk, Anders A., Cao, Jialu, Dockter, Christoph, Esdale, Julie, Gusarova, Galina, Kjeldsen, Kristian K., Mangerud, Jan, Rasic, Jeffrey T., Skadhauge, Birgitte, Svendsen, John Inge, Tikhonov, Alexei, Wincker, Patrick, Xing, Yingchun, Zhang, Yubin, Froese, Duane G., Rahbek, Carsten, Bravo, David Nogues, Holden, Philip B., Edwards, Neil R., Durbin, Richard, Meltzer, David J., Kjær, Kurt H., Möller, Per, Willerslev, Eske
Publicado 2021