ELIXIR pilot action: Marine metagenomics – towards a domain specific set of sustainable services

por Robertsen, Espen Mikal, Denise, Hubert, Mitchell, Alex, Finn, Robert D., Bongo, Lars Ailo, Willassen, Nils Peder
Publicado 2017

Studies on the CPA cysteine peptidase in the Leishmania infantum genome strain JPCM5

por Denise, Hubert, Poot, Jacqueline, Jiménez, Maribel, Ambit, Audrey, Herrmann, Daland C, Vermeulen, Arno N, Coombs, Graham H, Mottram, Jeremy C
Publicado 2006

HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes

por Forster, Samuel C., Browne, Hilary P., Kumar, Nitin, Hunt, Martin, Denise, Hubert, Mitchell, Alex, Finn, Robert D., Lawley, Trevor D.
Publicado 2016

EBI metagenomics in 2016 - an expanding and evolving resource for the analysis and archiving of metagenomic data

por Mitchell, Alex, Bucchini, Francois, Cochrane, Guy, Denise, Hubert, Hoopen, Petra ten, Fraser, Matthew, Pesseat, Sebastien, Potter, Simon, Scheremetjew, Maxim, Sterk, Peter, Finn, Robert D.
Publicado 2016

Optimised protocol for monitoring SARS-CoV-2 in wastewater using reverse complement PCR-based whole-genome sequencing

por Child, Harry T., O’Neill, Paul A., Moore, Karen, Rowe, William, Denise, Hubert, Bass, David, Wade, Matthew J., Loose, Matt, Paterson, Steve, van Aerle, Ronny, Jeffries, Aaron R.
Publicado 2023

Deep Sequencing Insights in Therapeutic shRNA Processing and siRNA Target Cleavage Precision

por Denise, Hubert, Moschos, Sterghios A., Sidders, Benjamin, Burden, Frances, Perkins, Hannah, Carter, Nikki, Stroud, Tim, Kennedy, Michael, Fancy, Sally-Ann, Lapthorn, Cris, Lavender, Helen, Kinloch, Ross, Suhy, David, Corbau, Romu
Publicado 2014

A spatio-temporal framework for modelling wastewater concentration during the COVID-19 pandemic

por Li, Guangquan, Denise, Hubert, Diggle, Peter, Grimsley, Jasmine, Holmes, Chris, James, Daniel, Jersakova, Radka, Mole, Callum, Nicholson, George, Smith, Camila Rangel, Richardson, Sylvia, Rowe, William, Rowlingson, Barry, Torabi, Fatemeh, Wade, Matthew J., Blangiardo, Marta
Publicado 2023

A comparison of precipitation and filtration-based SARS-CoV-2 recovery methods and the influence of temperature, turbidity, and surfactant load in urban wastewater

por Kevill, Jessica L., Pellett, Cameron, Farkas, Kata, Brown, Mathew R., Bassano, Irene, Denise, Hubert, McDonald, James E., Malham, Shelagh K., Porter, Jonathan, Warren, Jonathan, Evens, Nicholas P., Paterson, Steve, Singer, Andrew C., Jones, Davey L.
Publicado 2022

Rapid Assessment of SARS-CoV-2 Variant-Associated Mutations in Wastewater Using Real-Time RT-PCR

por Farkas, Kata, Pellett, Cameron, Williams, Rachel, Alex-Sanders, Natasha, Bassano, Irene, Brown, Mathew R., Denise, Hubert, Grimsley, Jasmine M. S., Kevill, Jessica L., Khalifa, Mohammad S., Pântea, Igor, Story, Rich, Wade, Matthew J., Woodhall, Nick, Jones, Davey L.
Publicado 2023

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies

por Mitchell, Alex L, Scheremetjew, Maxim, Denise, Hubert, Potter, Simon, Tarkowska, Aleksandra, Qureshi, Matloob, Salazar, Gustavo A, Pesseat, Sebastien, Boland, Miguel A, Hunter, Fiona M I, ten Hoopen, Petra, Alako, Blaise, Amid, Clara, Wilkinson, Darren J, Curtis, Thomas P, Cochrane, Guy, Finn, Robert D
Publicado 2018

Bacterial Adaptation to Venom in Snakes and Arachnida

por Esmaeilishirazifard, Elham, Usher, Louise, Trim, Carol, Denise, Hubert, Sangal, Vartul, Tyson, Gregory H., Barlow, Axel, Redway, Keith F., Taylor, John D., Kremyda-Vlachou, Myrto, Davies, Sam, Loftus, Teresa D., Lock, Mikaella M. G., Wright, Kstir, Dalby, Andrew, Snyder, Lori A. S., Wuster, Wolfgang, Trim, Steve, Moschos, Sterghios A.
Publicado 2022

Evaluation of variant calling algorithms for wastewater-based epidemiology using mixed populations of SARS-CoV-2 variants in synthetic and wastewater samples

por Bassano, Irene, Ramachandran, Vinoy K., Khalifa, Mohammad S., Lilley, Chris J., Brown, Mathew R., van Aerle, Ronny, Denise, Hubert, Rowe, William, George, Airey, Cairns, Edward, Wierzbicki, Claudia, Pickwell, Natalie D., Carlile, Matthew, Holmes, Nadine, Payne, Alexander, Loose, Matthew, Burke, Terry A., Paterson, Steve, Wade, Matthew J., Grimsley, Jasmine M. S.
Publicado 2023

Safe, Long-term Hepatic Expression of Anti-HCV shRNA in a Nonhuman Primate Model

por Suhy, David A, Kao, Shih-Chu, Mao, Tin, Whiteley, Laurence, Denise, Hubert, Souberbielle, Bernard, Burdick, Andrew D, Hayes, Kyle, Wright, J Fraser, Lavender, Helen, Roelvink, Peter, Kolykhalov, Alexander, Brady, Kevin, Moschos, Sterghios A, Hauck, Bernd, Zelenaia, Olga, Zhou, Shangzhen, Scribner, Curt, High, Katherine A, Renison, Sara H, Corbau, Romu
Publicado 2012

Wastewater monitoring for detection of public health markers during the COVID-19 pandemic: Near-source monitoring of schools in England over an academic year

por Hassard, Francis, Vu, Milan, Rahimzadeh, Shadi, Castro-Gutierrez, Victor, Stanton, Isobel, Burczynska, Beata, Wildeboer, Dirk, Baio, Gianluca, Brown, Mathew R., Garelick, Hemda, Hofman, Jan, Kasprzyk-Hordern, Barbara, Majeed, Azeem, Priest, Sally, Denise, Hubert, Khalifa, Mohammad, Bassano, Irene, Wade, Matthew J., Grimsley, Jasmine, Lundy, Lian, Singer, Andrew C., Di Cesare, Mariachiara
Publicado 2023

EBI metagenomics—a new resource for the analysis and archiving of metagenomic data

por Hunter, Sarah, Corbett, Matthew, Denise, Hubert, Fraser, Matthew, Gonzalez-Beltran, Alejandra, Hunter, Christopher, Jones, Philip, Leinonen, Rasko, McAnulla, Craig, Maguire, Eamonn, Maslen, John, Mitchell, Alex, Nuka, Gift, Oisel, Arnaud, Pesseat, Sebastien, Radhakrishnan, Rajesh, Rocca-Serra, Philippe, Scheremetjew, Maxim, Sterk, Peter, Vaughan, Daniel, Cochrane, Guy, Field, Dawn, Sansone, Susanna-Assunta
Publicado 2014

An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities

por O’Sullivan, Denise M., Doyle, Ronan M., Temisak, Sasithon, Redshaw, Nicholas, Whale, Alexandra S., Logan, Grace, Huang, Jiabin, Fischer, Nicole, Amos, Gregory C. A., Preston, Mark D., Marchesi, Julian R., Wagner, Josef, Parkhill, Julian, Motro, Yair, Denise, Hubert, Finn, Robert D., Harris, Kathryn A., Kay, Gemma L., O’Grady, Justin, Ransom-Jones, Emma, Wu, Huihai, Laing, Emma, Studholme, David J., Benavente, Ernest Diez, Phelan, Jody, Clark, Taane G., Moran-Gilad, Jacob, Huggett, Jim F.
Publicado 2021

TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei

por Shameer, Sanu, Logan-Klumpler, Flora J., Vinson, Florence, Cottret, Ludovic, Merlet, Benjamin, Achcar, Fiona, Boshart, Michael, Berriman, Matthew, Breitling, Rainer, Bringaud, Frédéric, Bütikofer, Peter, Cattanach, Amy M., Bannerman-Chukualim, Bridget, Creek, Darren J., Crouch, Kathryn, de Koning, Harry P., Denise, Hubert, Ebikeme, Charles, Fairlamb, Alan H., Ferguson, Michael A. J., Ginger, Michael L., Hertz-Fowler, Christiane, Kerkhoven, Eduard J., Mäser, Pascal, Michels, Paul A. M., Nayak, Archana, Nes, David W., Nolan, Derek P., Olsen, Christian, Silva-Franco, Fatima, Smith, Terry K., Taylor, Martin C., Tielens, Aloysius G. M., Urbaniak, Michael D., van Hellemond, Jaap J., Vincent, Isabel M., Wilkinson, Shane R., Wyllie, Susan, Opperdoes, Fred R., Barrett, Michael P., Jourdan, Fabien
Publicado 2014