Evaluation of CRISPR gene-editing tools in zebrafish

por Uribe-Salazar, José M., Kaya, Gulhan, Sekar, Aadithya, Weyenberg, KaeChandra, Ingamells, Cole, Dennis, Megan Y.
Publicado 2022

Identification of Structural Variation in Chimpanzees Using Optical Mapping and Nanopore Sequencing

por Soto, Daniela C., Shew, Colin, Mastoras, Mira, Schmidt, Joshua M., Sahasrabudhe, Ruta, Kaya, Gulhan, Andrés, Aida M., Dennis, Megan Y.
Publicado 2020

Selection on a Variant Associated with Improved Viral Clearance Drives Local, Adaptive Pseudogenization of Interferon Lambda 4 (IFNL4)

por Key, Felix M., Peter, Benjamin, Dennis, Megan Y., Huerta-Sánchez, Emilia, Tang, Wei, Prokunina-Olsson, Ludmila, Nielsen, Rasmus, Andrés, Aida M.
Publicado 2014

RapID Cell Counter: Semi-Automated and Mid-Throughput Estimation of Cell Density within Diverse Cortical Layers

por Sekar, Aarthi, Sanches, Thiago M., Hino, Keiko, Kumar, Matangi, Wang, Juliann, Ha, Elisa, Durbin-Johnson, Blythe, Simó, Sergi, Dennis, Megan Y.
Publicado 2021

Diverse Molecular Mechanisms Contribute to Differential Expression of Human Duplicated Genes

por Shew, Colin J, Carmona-Mora, Paulina, Soto, Daniela C, Mastoras, Mira, Roberts, Elizabeth, Rosas, Joseph, Jagannathan, Dhriti, Kaya, Gulhan, O’Geen, Henriette, Dennis, Megan Y
Publicado 2021

A Common Variant Associated with Dyslexia Reduces Expression of the KIAA0319 Gene

por Dennis, Megan Y., Paracchini, Silvia, Scerri, Thomas S., Prokunina-Olsson, Ludmila, Knight, Julian C., Wade-Martins, Richard, Coggill, Penny, Beck, Stephan, Green, Eric D., Monaco, Anthony P.
Publicado 2009

Human local adaptation of the TRPM8 cold receptor along a latitudinal cline

por Key, Felix M., Abdul-Aziz, Muslihudeen A., Mundry, Roger, Peter, Benjamin M., Sekar, Aarthi, D’Amato, Mauro, Dennis, Megan Y., Schmidt, Joshua M., Andrés, Aida M.
Publicado 2018

Assessment of Autism Zebrafish Mutant Models Using a High-Throughput Larval Phenotyping Platform

por Colón-Rodríguez, Alexandra, Uribe-Salazar, José M., Weyenberg, KaeChandra B., Sriram, Aditya, Quezada, Alejandra, Kaya, Gulhan, Jao, Emily, Radke, Brittany, Lein, Pamela J., Dennis, Megan Y.
Publicado 2020

Effects of pairing on color change and central gene expression in lined seahorses

por Mederos, Sabrina L., Duarte, Rafael C., Mastoras, Mira, Dennis, Megan Y., Settles, Matthew L., Lau, Allison R., Scott, Alexandria, Woodward, Kacie, Johnson, Colby, Seelke, Adele M. H., Bales, Karen L.
Publicado 2022

The birth of a human-specific neural gene by incomplete duplication and gene fusion

por Dougherty, Max L., Nuttle, Xander, Penn, Osnat, Nelson, Bradley J., Huddleston, John, Baker, Carl, Harshman, Lana, Duyzend, Michael H., Ventura, Mario, Antonacci, Francesca, Sandstrom, Richard, Dennis, Megan Y., Eichler, Evan E.
Publicado 2017

FixItFelix: improving genomic analysis by fixing reference errors

por Behera, Sairam, LeFaive, Jonathon, Orchard, Peter, Mahmoud, Medhat, Paulin, Luis F., Farek, Jesse, Soto, Daniela C., Parker, Stephen C. J., Smith, Albert V., Dennis, Megan Y., Zook, Justin M., Sedlazeck, Fritz J.
Publicado 2023

Reconstructing complex regions of genomes using long-read sequencing technology

por Huddleston, John, Ranade, Swati, Malig, Maika, Antonacci, Francesca, Chaisson, Mark, Hon, Lawrence, Sudmant, Peter H., Graves, Tina A., Alkan, Can, Dennis, Megan Y., Wilson, Richard K., Turner, Stephen W., Korlach, Jonas, Eichler, Evan E.
Publicado 2014

Balancing Selection Maintains a Form of ERAP2 that Undergoes Nonsense-Mediated Decay and Affects Antigen Presentation

por Andrés, Aida M., Dennis, Megan Y., Kretzschmar, Warren W., Cannons, Jennifer L., Lee-Lin, Shih-Queen, Hurle, Belen, Schwartzberg, Pamela L., Williamson, Scott H., Bustamante, Carlos D., Nielsen, Rasmus, Clark, Andrew G., Green, Eric D.
Publicado 2010

A Rare Myelin Protein Zero (MPZ) Variant Alters Enhancer Activity In Vitro and In Vivo

por Antonellis, Anthony, Dennis, Megan Y., Burzynski, Grzegorz, Huynh, Jimmy, Maduro, Valerie, Hodonsky, Chani J., Khajavi, Mehrdad, Szigeti, Kinga, Mukkamala, Sandeep, Bessling, Seneca L., Pavan, William J., McCallion, Andrew S., Lupski, James R., Green, Eric D.
Publicado 2010

Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution

por Maggiolini, Flavia Angela Maria, Sanders, Ashley D., Shew, Colin James, Sulovari, Arvis, Mao, Yafei, Puig, Marta, Catacchio, Claudia Rita, Dellino, Maria, Palmisano, Donato, Mercuri, Ludovica, Bitonto, Miriana, Porubský, David, Cáceres, Mario, Eichler, Evan E., Ventura, Mario, Dennis, Megan Y., Korbel, Jan O., Antonacci, Francesca
Publicado 2020

Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability

por Antonacci, Francesca, Dennis, Megan Y., Huddleston, John, Sudmant, Peter H., Steinberg, Karyn Meltz, Rosenfeld, Jill A., Miroballo, Mattia, Graves, Tina A., Vives, Laura, Malig, Maika, Denman, Laura, Raja, Archana, Stuart, Andrew, Tang, Joyce, Munson, Brenton, Shaffer, Lisa G., Amemiya, Chris T., Wilson, Richard K., Eichler, Evan E.
Publicado 2014

Psychedelics Promote Structural and Functional Neural Plasticity

por Ly, Calvin, Greb, Alexandra C., Cameron, Lindsay P., Wong, Jonathan M., Barragan, Eden V., Wilson, Paige C., Burbach, Kyle F., Zarandi, Sina Soltanzadeh, Sood, Alexander, Paddy, Michael R., Duim, Whitney C., Dennis, Megan Y., McAllister, A. Kimberley, Ori-McKenney, Kassandra M., Gray, John A., Olson, David E.
Publicado 2018

The evolution and population diversity of human-specific segmental duplications

por Dennis, Megan Y., Harshman, Lana, Nelson, Bradley J., Penn, Osnat, Cantsilieris, Stuart, Huddleston, John, Antonacci, Francesca, Penewit, Kelsi, Denman, Laura, Raja, Archana, Baker, Carl, Mark, Kenneth, Malig, Maika, Janke, Nicolette, Espinoza, Claudia, Stessman, Holly A.F., Nuttle, Xander, Hoekzema, Kendra, Lindsay-Graves, Tina A., Wilson, Richard K., Eichler, Evan E.
Publicado 2017

Placental methylome reveals a 22q13.33 brain regulatory gene locus associated with autism

por Zhu, Yihui, Gomez, J. Antonio, Laufer, Benjamin I., Mordaunt, Charles E., Mouat, Julia S., Soto, Daniela C., Dennis, Megan Y., Benke, Kelly S., Bakulski, Kelly M., Dou, John, Marathe, Ria, Jianu, Julia M., Williams, Logan A., Gutierrez Fugón, Orangel J., Walker, Cheryl K., Ozonoff, Sally, Daniels, Jason, Grosvenor, Luke P., Volk, Heather E., Feinberg, Jason I., Fallin, M. Daniele, Hertz-Picciotto, Irva, Schmidt, Rebecca J., Yasui, Dag H., LaSalle, Janine M.
Publicado 2022

Telomere-to-telomere assembly of a complete human X chromosome

por Miga, Karen H., Koren, Sergey, Rhie, Arang, Vollger, Mitchell R., Gershman, Ariel, Bzikadze, Andrey, Brooks, Shelise, Howe, Edmund, Porubsky, David, Logsdon, Glennis A., Schneider, Valerie A., Potapova, Tamara, Wood, Jonathan, Chow, William, Armstrong, Joel, Fredrickson, Jeanne, Pak, Evgenia, Tigyi, Kristof, Kremitzki, Milinn, Markovic, Christopher, Maduro, Valerie, Dutra, Amalia, Bouffard, Gerard G., Chang, Alexander M., Hansen, Nancy F., Wilfert, Amy B., Thibaud-Nissen, Françoise, Schmitt, Anthony D., Belton, Jon-Matthew, Selvaraj, Siddarth, Dennis, Megan Y., Soto, Daniela C., Sahasrabudhe, Ruta, Kaya, Gulhan, Quick, Josh, Loman, Nicholas J., Holmes, Nadine, Loose, Matthew, Surti, Urvashi, Risques, Rosa ana, Graves Lindsay, Tina A., Fulton, Robert, Hall, Ira, Paten, Benedict, Howe, Kerstin, Timp, Winston, Young, Alice, Mullikin, James C., Pevzner, Pavel A., Gerton, Jennifer L., Sullivan, Beth A., Eichler, Evan E., Phillippy, Adam M.
Publicado 2020