Inferring clonal evolution of tumors from single nucleotide somatic mutations

por Jiao, Wei, Vembu, Shankar, Deshwar, Amit G, Stein, Lincoln, Morris, Quaid
Publicado 2014

COSSMO: predicting competitive alternative splice site selection using deep learning

por Bretschneider, Hannes, Gandhi, Shreshth, Deshwar, Amit G, Zuberi, Khalid, Frey, Brendan J
Publicado 2018

Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction

por Quon, Gerald, Haider, Syed, Deshwar, Amit G, Cui, Ang, Boutros, Paul C, Morris, Quaid
Publicado 2013

PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors

por Deshwar, Amit G, Vembu, Shankar, Yung, Christina K, Jang, Gun Ho, Stein, Lincoln, Morris, Quaid
Publicado 2015

ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles

por Anghel, Catalina V, Quon, Gerald, Haider, Syed, Nguyen, Francis, Deshwar, Amit G, Morris, Quaid D, Boutros, Paul C
Publicado 2015

Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig

por Rubanova, Yulia, Shi, Ruian, Harrigan, Caitlin F., Li, Roujia, Wintersinger, Jeff, Sahin, Nil, Deshwar, Amit G., Morris, Quaid D.
Publicado 2020

Author Correction: Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig

por Rubanova, Yulia, Shi, Ruian, Harrigan, Caitlin F., Li, Roujia, Wintersinger, Jeff, Sahin, Nil, Deshwar, Amit G., Morris, Quaid D.
Publicado 2022

Transcriptome-Wide Off-Target Effects of Steric-Blocking Oligonucleotides

por Holgersen, Erle M., Gandhi, Shreshth, Zhou, Yongchao, Kim, Jinkuk, Vaz, Brandon, Bogojeski, Jovanka, Bugno, Magdalena, Shalev, Zvi, Cheung-Ong, Kahlin, Gonçalves, João, O'Hara, Matthew, Kron, Ken, Verby, Marta, Sun, Mark, Kakaradov, Boyko, Delong, Andrew, Merico, Daniele, Deshwar, Amit G.
Publicado 2021

ATP7B variant c.1934T > G p.Met645Arg causes Wilson disease by promoting exon 6 skipping

por Merico, Daniele, Spickett, Carl, O’Hara, Matthew, Kakaradov, Boyko, Deshwar, Amit G., Fradkin, Phil, Gandhi, Shreshth, Gao, Jiexin, Grant, Solomon, Kron, Ken, Schmitges, Frank W., Shalev, Zvi, Sun, Mark, Verby, Marta, Cahill, Matthew, Dowling, James J., Fransson, Johan, Wienholds, Erno, Frey, Brendan J.
Publicado 2020

A community effort to create standards for evaluating tumor subclonal reconstruction

por Salcedo, Adriana, Tarabichi, Maxime, Espiritu, Shadrielle Melijah G., Deshwar, Amit G., David, Matei, Wilson, Nathan M., Dentro, Stefan, Wintersinger, Jeff A., Liu, Lydia Y., Ko, Minjeong, Sivanandan, Srinivasan, Zhang, Hongjiu, Zhu, Kaiyi, Yang, Tai-Hsien Ou, Chilton, John M., Buchanan, Alex, Lalansingh, Christopher M., P'ng, Christine, Anghel, Catalina V., Umar, Imaad, Lo, Bryan, Zou, William, Simpson, Jared T., Stuart, Joshua M., Anastassiou, Dimitris, Guan, Yuanfang, Ewing, Adam D., Ellrott, Kyle, Wedge, David C., Morris, Quaid D., Van Loo, Peter, Boutros, Paul C.
Publicado 2020

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

por Dentro, Stefan C., Leshchiner, Ignaty, Haase, Kerstin, Tarabichi, Maxime, Wintersinger, Jeff, Deshwar, Amit G., Yu, Kaixian, Rubanova, Yulia, Macintyre, Geoff, Demeulemeester, Jonas, Vázquez-García, Ignacio, Kleinheinz, Kortine, Livitz, Dimitri G., Malikic, Salem, Donmez, Nilgun, Sengupta, Subhajit, Anur, Pavana, Jolly, Clemency, Cmero, Marek, Rosebrock, Daniel, Schumacher, Steven E., Fan, Yu, Fittall, Matthew, Drews, Ruben M., Yao, Xiaotong, Watkins, Thomas B.K., Lee, Juhee, Schlesner, Matthias, Zhu, Hongtu, Adams, David J., McGranahan, Nicholas, Swanton, Charles, Getz, Gad, Boutros, Paul C., Imielinski, Marcin, Beroukhim, Rameen, Sahinalp, S. Cenk, Ji, Yuan, Peifer, Martin, Martincorena, Inigo, Markowetz, Florian, Mustonen, Ville, Yuan, Ke, Gerstung, Moritz, Spellman, Paul T., Wang, Wenyi, Morris, Quaid D., Wedge, David C., Van Loo, Peter
Publicado 2021