Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria

por Everroad, R. Craig, Stuart, Rhona K., Bebout, Brad M., Detweiler, Angela M., Lee, Jackson Z., Woebken, Dagmar, Prufert-Bebout, Leslie, Pett-Ridge, Jennifer
Publicado 2016

Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat

por Lee, Jackson Z., Everroad, R. Craig, Karaoz, Ulas, Detweiler, Angela M., Pett-Ridge, Jennifer, Weber, Peter K., Prufert-Bebout, Leslie, Bebout, Brad M.
Publicado 2018

DiMeLo-seq: a long-read, single-molecule method for mapping protein-DNA interactions genome-wide

por Altemose, Nicolas, Maslan, Annie, Smith, Owen K., Sundararajan, Kousik, Brown, Rachel R., Mishra, Reet, Detweiler, Angela M., Neff, Norma, Miga, Karen H., Straight, Aaron F., Streets, Aaron
Publicado 2022

In host evolution of beta lactam resistance during active treatment for Pseudomonas aeruginosa bacteremia

por Spottiswoode, Natasha, Hao, Samantha, Sanchez-Guerrero, Estella, Detweiler, Angela M., Mekonen, Honey, Neff, Norma, Macmillan, Henriette, Schwartz, Brian S., Engel, Joanne, DeRisi, Joseph L., Miller, Steven A., Langelier, Charles R.
Publicado 2023

Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate

por D’haeseleer, Patrik, Lee, Jackson Z., Prufert-Bebout, Leslie, Burow, Luke C., Detweiler, Angela M., Weber, Peter K., Karaoz, Ulas, Brodie, Eoin L., Glavina del Rio, Tijana, Tringe, Susannah G., Bebout, Brad M., Pett-Ridge, Jennifer
Publicado 2017

Discovery of Chlorophyll d: Isolation and Characterization of a Far-Red Cyanobacterium from the Original Site of Manning and Strain (1943) at Moss Beach, California

por Kiang, Nancy Y., Swingley, Wesley D., Gautam, Dikshyant, Broddrick, Jared T., Repeta, Daniel J., Stolz, John F., Blankenship, Robert E., Wolf, Benjamin M., Detweiler, Angela M., Miller, Kathy Ann, Schladweiler, Jacob J., Lindeman, Ron, Parenteau, Mary N.
Publicado 2022

An Unusual Inverted Saline Microbial Mat Community in an Interdune Sabkha in the Rub' al Khali (the Empty Quarter), United Arab Emirates

por McKay, Christopher P., Rask, Jon C., Detweiler, Angela M., Bebout, Brad M., Everroad, R. Craig, Lee, Jackson Z., Chanton, Jeffrey P., Mayer, Marisa H., Caraballo, Adrian A. L., Kapili, Bennett, Al-Awar, Meshgan, Al-Farraj, Asma
Publicado 2016

A 2-Gene Host Signature for Improved Accuracy of COVID-19 Diagnosis Agnostic to Viral Variants

por Albright, Jack, Mick, Eran, Sanchez-Guerrero, Estella, Kamm, Jack, Mitchell, Anthea, Detweiler, Angela M., Neff, Norma, Tsitsiklis, Alexandra, Hayakawa Serpa, Paula, Ratnasiri, Kalani, Havlir, Diane, Kistler, Amy, DeRisi, Joseph L., Pisco, Angela Oliveira, Langelier, Charles R.
Publicado 2022

Lettuce (Lactuca sativa) productivity influenced by microbial inocula under nitrogen-limited conditions in aquaponics

por Day, Jessica A., Diener, Christian, Otwell, Anne E., Tams, Kourtney E., Bebout, Brad, Detweiler, Angela M., Lee, Michael D., Scott, Madeline T., Ta, Wilson, Ha, Monica, Carreon, Shienna A., Tong, Kenny, Ali, Abdirizak A., Gibbons, Sean M., Baliga, Nitin S.
Publicado 2021

Early prediction of preeclampsia in pregnancy with cell-free RNA

por Moufarrej, Mira N., Vorperian, Sevahn K., Wong, Ronald J., Campos, Ana A., Quaintance, Cecele C., Sit, Rene V., Tan, Michelle, Detweiler, Angela M., Mekonen, Honey, Neff, Norma F., Baruch-Gravett, Courtney, Litch, James A., Druzin, Maurice L., Winn, Virginia D., Shaw, Gary M., Stevenson, David K., Quake, Stephen R.
Publicado 2022

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies

por Sevim, Volkan, Lee, Juna, Egan, Robert, Clum, Alicia, Hundley, Hope, Lee, Janey, Everroad, R. Craig, Detweiler, Angela M., Bebout, Brad M., Pett-Ridge, Jennifer, Göker, Markus, Murray, Alison E., Lindemann, Stephen R., Klenk, Hans-Peter, O’Malley, Ronan, Zane, Matthew, Cheng, Jan-Fang, Copeland, Alex, Daum, Christopher, Singer, Esther, Woyke, Tanja
Publicado 2019

Upper airway gene expression reveals a more robust innate and adaptive immune response to SARS-CoV-2 in children compared with older adults

por Mick, Eran, Tsitsiklis, Alexandra, Spottiswoode, Natasha, Caldera, Saharai, Serpa, Paula Hayakawa, Detweiler, Angela M., Neff, Norma, Pisco, Angela Oliveira, Li, Lucy M., Retallack, Hanna, Ratnasiri, Kalani, Williamson, Kayla M., Soesanto, Victoria, Simões, Eric A. F., Kistler, Amy, Wagner, Brandie D., DeRisi, Joseph L., Ambroggio, Lilliam, Mourani, Peter M., Langelier, Charles R.
Publicado 2021

Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children

por Mick, Eran, Tsitsiklis, Alexandra, Kamm, Jack, Kalantar, Katrina L., Caldera, Saharai, Lyden, Amy, Tan, Michelle, Detweiler, Angela M., Neff, Norma, Osborne, Christina M., Williamson, Kayla M., Soesanto, Victoria, Leroue, Matthew, Maddux, Aline B., Simões, Eric A.F., Carpenter, Todd C., Wagner, Brandie D., DeRisi, Joseph L., Ambroggio, Lilliam, Mourani, Peter M., Langelier, Charles R.
Publicado 2023

Upper airway gene expression differentiates COVID-19 from other acute respiratory illnesses and reveals suppression of innate immune responses by SARS-CoV-2

por Mick, Eran, Kamm, Jack, Pisco, Angela Oliveira, Ratnasiri, Kalani, Babik, Jennifer M., Calfee, Carolyn S., Castañeda, Gloria, DeRisi, Joseph L., Detweiler, Angela M., Hao, Samantha, Kangelaris, Kirsten N., Kumar, G. Renuka, Li, Lucy M., Mann, Sabrina A., Neff, Norma, Prasad, Priya A., Serpa, Paula Hayakawa, Shah, Sachin J., Spottiswoode, Natasha, Tan, Michelle, Christenson, Stephanie A., Kistler, Amy, Langelier, Charles
Publicado 2020

Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children

por Mick, Eran, Tsitsiklis, Alexandra, Spottiswoode, Natasha, Caldera, Saharai, Serpa, Paula Hayakawa, Detweiler, Angela M., Neff, Norma, Pisco, Angela Oliveira, Li, Lucy M., Retallack, Hanna, Ratnasiri, Kalani, Williamson, Kayla M., Soesanto, Victoria, Simões, Eric A. F., Smith, Christiana, Abuogi, Lisa, Kistler, Amy, Wagner, Brandie D., DeRisi, Joseph L., Ambroggio, Lilliam, Mourani, Peter M., Langelier, Charles R.
Publicado 2022

Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses

por Mick, Eran, Kamm, Jack, Pisco, Angela Oliveira, Ratnasiri, Kalani, Babik, Jennifer M., Castañeda, Gloria, DeRisi, Joseph L., Detweiler, Angela M., Hao, Samantha L., Kangelaris, Kirsten N., Kumar, G. Renuka, Li, Lucy M., Mann, Sabrina A., Neff, Norma, Prasad, Priya A., Serpa, Paula Hayakawa, Shah, Sachin J., Spottiswoode, Natasha, Tan, Michelle, Calfee, Carolyn S., Christenson, Stephanie A., Kistler, Amy, Langelier, Charles
Publicado 2020

Identification of a Polymorphism in the N Gene of SARS-CoV-2 That Adversely Impacts Detection by Reverse Transcription-PCR

por Vanaerschot, Manu, Mann, Sabrina A., Webber, James T., Kamm, Jack, Bell, Sidney M., Bell, John, Hong, Si Noon, Nguyen, Minh Phuong, Chan, Lienna Y., Bhatt, Karan D., Tan, Michelle, Detweiler, Angela M., Espinosa, Alex, Wu, Wesley, Batson, Joshua, Dynerman, David, Wadford, Debra A., Puschnik, Andreas S., Neff, Norma, Ahyong, Vida, Miller, Steve, Ayscue, Patrick, Tato, Cristina M., Paul, Simon, Kistler, Amy L., DeRisi, Joseph L., Crawford, Emily D.
Publicado 2020

Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system

por Bohl, Jennifer A., Lay, Sreyngim, Chea, Sophana, Ahyong, Vida, Parker, Daniel M., Gallagher, Shannon, Fintzi, Jonathan, Man, Somnang, Ponce, Aiyana, Sreng, Sokunthea, Kong, Dara, Oliveira, Fabiano, Kalantar, Katrina, Tan, Michelle, Fahsbender, Liz, Sheu, Jonathan, Neff, Norma, Detweiler, Angela M., Yek, Christina, Ly, Sokna, Sath, Rathanak, Huch, Chea, Kry, Hok, Leang, Rithea, Huy, Rekol, Lon, Chanthap, Tato, Cristina M., DeRisi, Joseph L., Manning, Jessica E.
Publicado 2022

Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS

por Sarma, Aartik, Christenson, Stephanie A., Byrne, Ashley, Mick, Eran, Pisco, Angela Oliveira, DeVoe, Catherine, Deiss, Thomas, Ghale, Rajani, Zha, Beth Shoshana, Tsitsiklis, Alexandra, Jauregui, Alejandra, Moazed, Farzad, Detweiler, Angela M., Spottiswoode, Natasha, Sinha, Pratik, Neff, Norma, Tan, Michelle, Serpa, Paula Hayakawa, Willmore, Andrew, Ansel, K. Mark, Wilson, Jennifer G., Leligdowicz, Aleksandra, Siegel, Emily R., Sirota, Marina, DeRisi, Joseph L., Matthay, Michael A., Hendrickson, Carolyn M., Kangelaris, Kirsten N., Krummel, Matthew F., Woodruff, Prescott G., Erle, David J., Calfee, Carolyn S., Langelier, Charles R.
Publicado 2021

Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19

por Shah, Sachin J., Barish, Peter N., Prasad, Priya A., Kistler, Amy, Neff, Norma, Kamm, Jack, Li, Lucy M., Chiu, Charles Y., Babik, Jennifer M., Fang, Margaret C., Abe-Jones, Yumiko, Alipanah, Narges, Alvarez, Francisco N., Botvinnik, Olga Borisovna, Castaneda, Gloria, Dadasovich, Rand M., Davis, Jennifer, Deng, Xianding, DeRisi, Joseph L., Detweiler, Angela M., Federman, Scot, Haliburton, John, Hao, Samantha, Kerkhoff, Andrew D., Kumar, G. Renuka, Malcolm, Katherine B., Mann, Sabrina A., Martinez, Sandra, Mary, Rupa K., Mick, Eran, Mwakibete, Lusajo, Najafi, Nader, Peluso, Michael J., Phelps, Maira, Pisco, Angela Oliveira, Ratnasiri, Kalani, Rubio, Luis A., Sellas, Anna, Sherwood, Kyla D., Sheu, Jonathan, Spottiswoode, Natasha, Tan, Michelle, Yu, Guixia, Kangelaris, Kirsten Neudoerffer, Langelier, Charles
Publicado 2020