File Formats Commonly Used in Mass Spectrometry Proteomics

por Deutsch, Eric W.
Publicado 2012

mspecLINE: bridging knowledge of human disease with the proteome

por Handcock, Jeremy, Deutsch, Eric W, Boyle, John
Publicado 2010

Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future

por Jones, Andrew R., Deutsch, Eric W., Vizcaíno, Juan Antonio
Publicado 2022

Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1

por Bonneau, Richard, Baliga, Nitin S, Deutsch, Eric W, Shannon, Paul, Hood, Leroy
Publicado 2004

Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future

por Bandeira, Nuno, Deutsch, Eric W., Kohlbacher, Oliver, Martens, Lennart, Vizcaíno, Juan Antonio
Publicado 2021

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

por Malmström, Johan, Beck, Martin, Schmidt, Alexander, Lange, Vinzenz, Deutsch, Eric W., Aebersold, Ruedi
Publicado 2009

A honey bee (Apis mellifera L.) PeptideAtlas crossing castes and tissues

por Chan, Queenie WT, Parker, Robert, Sun, Zhi, Deutsch, Eric W, Foster, Leonard J
Publicado 2011

mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements

por Bhamber, Ranjeet S., Jankevics, Andris, Deutsch, Eric W., Jones, Andrew R., Dowsey, Andrew W.
Publicado 2020

SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology

por Marzolf, Bruz, Deutsch, Eric W, Moss, Patrick, Campbell, David, Johnson, Michael H, Galitski, Timothy
Publicado 2006

Visual proteomics of the human pathogen Leptospira interrogans

por Beck, Martin, Malmström, Johan A., Lange, Vinzenz, Schmidt, Alexander, Deutsch, Eric W., Aebersold, Ruedi
Publicado 2009

Toward Completion of the Human Proteome Parts List: Progress Uncovering Proteins That Are Missing or Have Unknown Function and Developing Analytical Methods

por Paik, Young-Ki, Overall, Christopher M., Corrales, Fernando, Deutsch, Eric W., Lane, Lydie, Omenn, Gilbert S.
Publicado 2018

The urologic epithelial stem cell database (UESC) – a web tool for cell type-specific gene expression and immunohistochemistry images of the prostate and bladder

por Pascal, Laura E, Deutsch, Eric W, Campbell, David S, Korb, Martin, True, Lawrence D, Liu, Alvin Y
Publicado 2007

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation

por Loevenich, Sandra N, Brunner, Erich, King, Nichole L, Deutsch, Eric W, Stein, Stephen E, Aebersold, Ruedi, Hafen, Ernst
Publicado 2009

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework

por Lewis, Steven, Csordas, Attila, Killcoyne, Sarah, Hermjakob, Henning, Hoopmann, Michael R, Moritz, Robert L, Deutsch, Eric W, Boyle, John
Publicado 2012

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics

por Bell, Alexander W., Deutsch, Eric W., Au, Catherine E., Kearney, Robert E., Beavis, Ron, Sechi, Salvatore, Nilsson, Tommy, Bergeron, John J.M.
Publicado 2009

Profiling the Human Phosphoproteome to Estimate the True Extent of Protein Phosphorylation

por Kalyuzhnyy, Anton, Eyers, Patrick A., Eyers, Claire E., Bowler-Barnett, Emily, Martin, Maria J., Sun, Zhi, Deutsch, Eric W., Jones, Andrew R.
Publicado 2022

The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data

por Menschaert, Gerben, Wang, Xiaojing, Jones, Andrew R., Ghali, Fawaz, Fenyö, David, Olexiouk, Volodimir, Zhang, Bing, Deutsch, Eric W., Ternent, Tobias, Vizcaíno, Juan Antonio
Publicado 2018

Method for Independent Estimation of the False Localization Rate for Phosphoproteomics

por Ramsbottom, Kerry A., Prakash, Ananth, Riverol, Yasset Perez, Camacho, Oscar Martin, Martin, Maria-Jesus, Vizcaíno, Juan Antonio, Deutsch, Eric W., Jones, Andrew R.
Publicado 2022

The PeptideAtlas project

por Desiere, Frank, Deutsch, Eric W., King, Nichole L., Nesvizhskii, Alexey I., Mallick, Parag, Eng, Jimmy, Chen, Sharon, Eddes, James, Loevenich, Sandra N., Aebersold, Ruedi
Publicado 2006

Correlation of mRNA and protein levels: Cell type-specific gene expression of cluster designation antigens in the prostate

por Pascal, Laura E, True, Lawrence D, Campbell, David S, Deutsch, Eric W, Risk, Michael, Coleman, Ilsa M, Eichner, Lillian J, Nelson, Peter S, Liu, Alvin Y
Publicado 2008