Accelerated nanopore basecalling with SLOW5 data format

por Samarakoon, Hiruna, Ferguson, James M, Gamaarachchi, Hasindu, Deveson, Ira W
Publicado 2023

An update on the neurological short tandem repeat expansion disorders and the emergence of long-read sequencing diagnostics

por Chintalaphani, Sanjog R., Pineda, Sandy S., Deveson, Ira W., Kumar, Kishore R.
Publicado 2021

Chimeric synthetic reference standards enable cross-validation of positive and negative controls in SARS-CoV-2 molecular tests

por Madala, Bindu Swapna, Reis, Andre L. M., Deveson, Ira W., Rawlinson, William, Mercer, Tim R.
Publicado 2021

Ultra-deep sequencing data from a liquid biopsy proficiency study demonstrating analytic validity

por Gong, Binsheng, Deveson, Ira W., Mercer, Timothy, Johann, Donald J., Jones, Wendell, Tong, Weida, Xu, Joshua
Publicado 2022

Truncated jarid2 and kdm6b transcripts are associated with temperature-induced sex reversal during development in a dragon lizard

por Whiteley, Sarah L., Wagner, Susan, Holleley, Clare E., Deveson, Ira W., Marshall Graves, Jennifer A., Georges, Arthur
Publicado 2022

Flexible and efficient handling of nanopore sequencing signal data with slow5tools

por Samarakoon, Hiruna, Ferguson, James M., Jenner, Sasha P., Amos, Timothy G., Parameswaran, Sri, Gamaarachchi, Hasindu, Deveson, Ira W.
Publicado 2023

Differential intron retention in Jumonji chromatin modifier genes is implicated in reptile temperature-dependent sex determination

por Deveson, Ira W., Holleley, Clare E., Blackburn, James, Marshall Graves, Jennifer A., Mattick, John S., Waters, Paul D., Georges, Arthur
Publicado 2017

Two transcriptionally distinct pathways drive female development in a reptile with both genetic and temperature dependent sex determination

por Whiteley, Sarah L., Holleley, Clare E., Wagner, Susan, Blackburn, James, Deveson, Ira W., Marshall Graves, Jennifer A., Georges, Arthur
Publicado 2021

InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses

por Ferguson, James M, Gamaarachchi, Hasindu, Nguyen, Thanh, Gollon, Alyne, Tong, Stephanie, Aquilina-Reid, Chiara, Bowen-James, Rachel, Deveson, Ira W
Publicado 2021

Sex-specific transcriptomic and epitranscriptomic signatures of PTSD-like fear acquisition

por Reis, Andre L.M., Hammond, Jillian M., Stevanovski, Igor, Arnold, Jonathon C., McGregor, Iain S., Deveson, Ira W., Gururajan, Anand
Publicado 2022

A universal and independent synthetic DNA ladder for the quantitative measurement of genomic features

por Reis, Andre L. M., Deveson, Ira W., Wong, Ted, Madala, Bindu Swapna, Barker, Chris, Blackburn, James, Marcellin, Esteban, Mercer, Tim R.
Publicado 2020

Genopo: a nanopore sequencing analysis toolkit for portable Android devices

por Samarakoon, Hiruna, Punchihewa, Sanoj, Senanayake, Anjana, Hammond, Jillian M., Stevanovski, Igor, Ferguson, James M., Ragel, Roshan, Gamaarachchi, Hasindu, Deveson, Ira W.
Publicado 2020

Using synthetic chromosome controls to evaluate the sequencing of difficult regions within the human genome

por Reis, Andre L. M., Deveson, Ira W., Madala, Bindu Swapna, Wong, Ted, Barker, Chris, Xu, Joshua, Lennon, Niall, Tong, Weida, Mercer, Tim R.
Publicado 2022

Gene expression of male pathway genes sox9 and amh during early sex differentiation in a reptile departs from the classical amniote model

por Wagner, Susan, Whiteley, Sarah L., Castelli, Meghan, Patel, Hardip R., Deveson, Ira W., Blackburn, James, Holleley, Clare E., Marshall Graves, Jennifer A., Georges, Arthur
Publicado 2023

Chiral DNA sequences as commutable controls for clinical genomics

por Deveson, Ira W., Madala, Bindu Swapna, Blackburn, James, Barker, Chris, Wong, Ted, Barton, Kirston M., Smith, Martin A., Watkins, D. Neil, Mercer, Tim R.
Publicado 2019

Fast nanopore sequencing data analysis with SLOW5

por Gamaarachchi, Hasindu, Samarakoon, Hiruna, Jenner, Sasha P., Ferguson, James M., Amos, Timothy G., Hammond, Jillian M., Saadat, Hassaan, Smith, Martin A., Parameswaran, Sri, Deveson, Ira W.
Publicado 2022

Library adaptors with integrated reference controls improve the accuracy and reliability of nanopore sequencing

por Gunter, Helen M., Youlten, Scott E., Madala, Bindu Swapna, Reis, Andre L. M., Stevanovski, Igor, Wong, Ted, Kummerfield, Sarah K., Deveson, Ira W., Santini, Nadia S., Marcellin, Esteban, Mercer, Tim R.
Publicado 2022

Transcriptome and Genome Analysis Uncovers a DMD Structural Variant: A Case Report

por Folland, Chiara, Ganesh, Vijay, Weisburd, Ben, McLean, Catriona, Kornberg, Andrew J., O'Donnell-Luria, Anne, Rehm, Heidi L., Stevanovski, Igor, Chintalaphani, Sanjog R., Kennedy, Paul, Deveson, Ira W., Ravenscroft, Gianina
Publicado 2023

Diagnosis of fusion genes using targeted RNA sequencing

por Heyer, Erin E., Deveson, Ira W., Wooi, Danson, Selinger, Christina I., Lyons, Ruth J., Hayes, Vanessa M., O’Toole, Sandra A., Ballinger, Mandy L., Gill, Devinder, Thomas, David M., Mercer, Tim R., Blackburn, James
Publicado 2019

Author Correction: Diagnosis of fusion genes using targeted RNA sequencing

por Heyer, Erin E., Deveson, Ira W., Wooi, Danson, Selinger, Christina I., Lyons, Ruth J., Hayes, Vanessa M., O’Toole, Sandra A., Ballinger, Mandy L., Gill, Devinder, Thomas, David M., Mercer, Tim R., Blackburn, James
Publicado 2020