Integrated single-cell sequencing of 5-hydroxymethylcytosine and genomic DNA using scH&G-seq

por Chialastri, Alex, Wangsanuwat, Chatarin, Dey, Siddharth S.
Publicado 2021

Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity

por Chialastri, Alex, Sarkar, Saumya, Schauer, Elizabeth E., Lamba, Shyl, Dey, Siddharth S.
Publicado 2023

Integrated genome and transcriptome sequencing from the same cell

por Dey, Siddharth S., Kester, Lennart, Spanjaard, Bastiaan, Bienko, Magda, van Oudenaarden, Alexander
Publicado 2015

A probabilistic framework for cellular lineage reconstruction using integrated single-cell 5-hydroxymethylcytosine and genomic DNA sequencing

por Wangsanuwat, Chatarin, Chialastri, Alex, Aldeguer, Javier F., Rivron, Nicolas C., Dey, Siddharth S.
Publicado 2021

Orthogonal control of expression mean and variance by epigenetic features at different genomic loci

por Dey, Siddharth S, Foley, Jonathan E, Limsirichai, Prajit, Schaffer, David V, Arkin, Adam P
Publicado 2015

Efficient and cost-effective bacterial mRNA sequencing from low input samples through ribosomal RNA depletion

por Wangsanuwat, Chatarin, Heom, Kellie A., Liu, Estella, O’Malley, Michelle A., Dey, Siddharth S.
Publicado 2020

An Extended Culture System that Supports Human Primordial Germ Cell-like Cell Survival and Initiation of DNA Methylation Erasure

por Gell, Joanna J., Liu, Wanlu, Sosa, Enrique, Chialastri, Alex, Hancock, Grace, Tao, Yu, Wamaitha, Sissy E., Bower, Grace, Dey, Siddharth S., Clark, Amander T.
Publicado 2020

scDam&T‐seq combines DNA adenine methyltransferase-based labeling of protein-DNA contact sites with transcriptome sequencing to analyze regulatory programs in single cells

por Rooijers, Koos, Markodimitraki, Corina M., Rang, Franka J., de Vries, Sandra S., Chialastri, Alex, de Luca, Kim L., Mooijman, Dylan, Dey, Siddharth S., Kind, Jop
Publicado 2019

Control over single-cell distribution of G1 lengths by WNT governs pluripotency

por Jang, Jiwon, Han, Dasol, Golkaram, Mahdi, Audouard, Morgane, Liu, Guojing, Bridges, Daniel, Hellander, Stefan, Chialastri, Alex, Dey, Siddharth S., Petzold, Linda R., Kosik, Kenneth S.
Publicado 2019

Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development

por Sen, Maya, Mooijman, Dylan, Chialastri, Alex, Boisset, Jean-Charles, Popovic, Mina, Heindryckx, Björn, Chuva de Sousa Lopes, Susana M., Dey, Siddharth S., van Oudenaarden, Alexander
Publicado 2021