T-RMSD: a web server for automated fine-grained protein structural classification

por Magis, Cedrik, Di Tommaso, Paolo, Notredame, Cedric
Publicado 2013

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee

por Chang, Jia-Ming, Di Tommaso, Paolo, Taly, Jean-François, Notredame, Cedric
Publicado 2012

TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction

por Chang, Jia-Ming, Di Tommaso, Paolo, Lefort, Vincent, Gascuel, Olivier, Notredame, Cedric
Publicado 2015

Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud

por Di Tommaso, Paolo, Orobitg, Miquel, Guirado, Fernando, Cores, Fernado, Espinosa, Toni, Notredame, Cedric
Publicado 2010

The impact of Docker containers on the performance of genomic pipelines

por Di Tommaso, Paolo, Palumbo, Emilio, Chatzou, Maria, Prieto, Pablo, Heuer, Michael L., Notredame, Cedric
Publicado 2015

SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments

por Di Tommaso, Paolo, Bussotti, Giovanni, Kemena, Carsten, Capriotti, Emidio, Chatzou, Maria, Prieto, Pablo, Notredame, Cedric
Publicado 2014

Incorporating alignment uncertainty into Felsenstein’s phylogenetic bootstrap to improve its reliability

por Chang, Jia-Ming, Floden, Evan W, Herrero, Javier, Gascuel, Olivier, Di Tommaso, Paolo, Notredame, Cedric
Publicado 2019

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

por Di Tommaso, Paolo, Moretti, Sebastien, Xenarios, Ioannis, Orobitg, Miquel, Montanyola, Alberto, Chang, Jia-Ming, Taly, Jean-François, Notredame, Cedric
Publicado 2011

Large multiple sequence alignments with a root-to-leaf regressive method

por Garriga, Edgar, Di Tommaso, Paolo, Magis, Cedrik, Erb, Ionas, Mansouri, Leila, Baltzis, Athanasios, Laayouni, Hafid, Kondrashov, Fyodor, Floden, Evan, Notredame, Cedric
Publicado 2019

Scalable Workflows and Reproducible Data Analysis for Genomics

por Strozzi, Francesco, Janssen, Roel, Wurmus, Ricardo, Crusoe, Michael R., Githinji, George, Di Tommaso, Paolo, Belhachemi, Dominique, Möller, Steffen, Smant, Geert, de Ligt, Joep, Prins, Pjotr
Publicado 2019