Exploring Host–Pathogen Interactions through Biological Control

por Di Giallonardo, Francesca, Holmes, Edward C.
Publicado 2015

A Framework for Inferring Fitness Landscapes of Patient-Derived Viruses Using Quasispecies Theory

por Seifert, David, Di Giallonardo, Francesca, Metzner, Karin J., Günthard, Huldrych F., Beerenwinkel, Niko
Publicado 2015

Hidden diversity and evolution of viruses in market fish

por Geoghegan, Jemma L, Di Giallonardo, Francesca, Cousins, Kate, Shi, Mang, Williamson, Jane E, Holmes, Edward C
Publicado 2018

A10 Using the molecular epidemiology of HIV transmission in New South Wales to inform public health response: Assessing the representativeness of linked phylogenetic data

por Pinto, Angie, Di Giallonardo, Francesca, Keen, Phillip, Cooper, Craig, Telfer, Barbara, Cooper, David, Grulich, Andrew, Kelleher, Anthony
Publicado 2018

Conserved epitopes with high HLA-I population coverage are targets of CD8(+) T cells associated with high IFN-γ responses against all dengue virus serotypes

por Adikari, Thiruni N., Di Giallonardo, Francesca, Leung, Preston, Grifoni, Alba, Sette, Alex, Weiskopf, Daniela, Bull, Rowena A., Luciani, Fabio
Publicado 2020

Monocyte-derived macrophages exhibit distinct and more restricted HIV-1 integration site repertoire than CD4(+) T cells

por Kok, Yik Lim, Vongrad, Valentina, Shilaih, Mohaned, Di Giallonardo, Francesca, Kuster, Herbert, Kouyos, Roger, Günthard, Huldrych F., Metzner, Karin J.
Publicado 2016

Evolution of Human Respiratory Syncytial Virus (RSV) over Multiple Seasons in New South Wales, Australia

por Di Giallonardo, Francesca, Kok, Jen, Fernandez, Marian, Carter, Ian, Geoghegan, Jemma L., Dwyer, Dominic E., Holmes, Edward C., Eden, John-Sebastian
Publicado 2018

Sustained Wolbachia-mediated blocking of dengue virus isolates following serial passage in Aedes aegypti cell culture

por Koh, Cassandra, Audsley, Michelle D, Di Giallonardo, Francesca, Kerton, Emily J, Young, Paul R, Holmes, Edward C, McGraw, Elizabeth A
Publicado 2019

Reappearance of Minority K103N HIV-1 Variants after Interruption of ART Initiated during Primary HIV-1 Infection

por Metzner, Karin J., Leemann, Christine, Di Giallonardo, Francesca, Grube, Christina, Scherrer, Alexandra U., Braun, Dominique, Kuster, Herbert, Weber, Rainer, Guenthard, Huldrych F.
Publicado 2011

Genomic Epidemiology of the First Wave of SARS-CoV-2 in Italy

por Di Giallonardo, Francesca, Duchene, Sebastian, Puglia, Ilaria, Curini, Valentina, Profeta, Francesca, Cammà, Cesare, Marcacci, Maurilia, Calistri, Paolo, Holmes, Edward C., Lorusso, Alessio
Publicado 2020

Emergence and Spread of SARS-CoV-2 Lineages B.1.1.7 and P.1 in Italy

por Di Giallonardo, Francesca, Puglia, Ilaria, Curini, Valentina, Cammà, Cesare, Mangone, Iolanda, Calistri, Paolo, Cobbin, Joanna C. A., Holmes, Edward C., Lorusso, Alessio
Publicado 2021

Next-Generation Sequencing of HIV-1 RNA Genomes: Determination of Error Rates and Minimizing Artificial Recombination

por Di Giallonardo, Francesca, Zagordi, Osvaldo, Duport, Yannick, Leemann, Christine, Joos, Beda, Künzli-Gontarczyk, Marzanna, Bruggmann, Rémy, Beerenwinkel, Niko, Günthard, Huldrych F., Metzner, Karin J.
Publicado 2013

Cross-validation to select Bayesian hierarchical models in phylogenetics

por Duchêne, Sebastián, Duchêne, David A., Di Giallonardo, Francesca, Eden, John-Sebastian, Geoghegan, Jemma L., Holt, Kathryn E., Ho, Simon Y. W., Holmes, Edward C.
Publicado 2016

Tailored enrichment strategy detects low abundant small noncoding RNAs in HIV-1 infected cells

por Althaus, Claudia F, Vongrad, Valentina, Niederöst, Barbara, Joos, Beda, Di Giallonardo, Francesca, Rieder, Philip, Pavlovic, Jovan, Trkola, Alexandra, Günthard, Huldrych F, Metzner, Karin J, Fischer, Marek
Publicado 2012

A suicide gene approach using the human pro-apoptotic protein tBid inhibits HIV-1 replication

por Huelsmann, Peter M, Hofmann, Andreas D, Knoepfel, Stefanie A, Popp, Jasmin, Rauch, Pia, Di Giallonardo, Francesca, Danke, Christina, Gueckel, Eva, Schambach, Axel, Wolff, Horst, Metzner, Karin J, Berens, Christian
Publicado 2011

Multiple detection and spread of novel strains of the SARS-CoV-2 B.1.177 (B.1.177.75) lineage that test negative by a commercially available nucleocapsid gene real-time RT-PCR

por Amato, Laura, Jurisic, Lucija, Puglia, Ilaria, Di Lollo, Valeria, Curini, Valentina, Torzi, Giuseppe, Di Girolamo, Arturo, Mangone, Iolanda, Mancinelli, Adamo, Decaro, Nicola, Calistri, Paolo, Di Giallonardo, Francesca, Lorusso, Alessio, D’Alterio, Nicola
Publicado 2021

HIV-1 integration sites in CD4(+) T cells during primary, chronic, and late presentation of HIV-1 infection

por Kok, Yik Lim, Vongrad, Valentina, Chaudron, Sandra E., Shilaih, Mohaned, Leemann, Christine, Neumann, Kathrin, Kusejko, Katharina, Di Giallonardo, Francesca, Kuster, Herbert, Braun, Dominique L., Kouyos, Roger D., Günthard, Huldrych F., Metzner, Karin J.
Publicado 2021

Virome composition in marine fish revealed by meta-transcriptomics

por Geoghegan, Jemma L, Di Giallonardo, Francesca, Wille, Michelle, Ortiz-Baez, Ayda Susana, Costa, Vincenzo A, Ghaly, Timothy, Mifsud, Jonathon C O, Turnbull, Olivia M H, Bellwood, David R, Williamson, Jane E, Holmes, Edward C
Publicado 2021

Red fox viromes in urban and rural landscapes

por Campbell, Sarah J, Ashley, Wilbur, Gil-Fernandez, Margarita, Newsome, Thomas M, Di Giallonardo, Francesca, Ortiz-Baez, Ayda Susana, Mahar, Jackie E, Towerton, Alison L, Gillings, Michael, Holmes, Edward C, Carthey, Alexandra J R, Geoghegan, Jemma L
Publicado 2020

Epidemiological and genomic findings of the first documented Italian outbreak of SARS-CoV-2 Alpha variant of concern

por Amato, Laura, Candeloro, Luca, Di Girolamo, Arturo, Savini, Lara, Puglia, Ilaria, Marcacci, Maurilia, Caporale, Marialuigia, Mangone, Iolanda, Cammà, Cesare, Conte, Annamaria, Torzi, Giuseppe, Mancinelli, Adamo, Di Giallonardo, Francesca, Lorusso, Alessio, Migliorati, Giacomo, Schael, Thomas, D’Alterio, Nicola, Calistri, Paolo
Publicado 2022