The Heterogeneous Landscape and Early Evolution of Pathogen-Associated CpG Dinucleotides in SARS-CoV-2

por Di Gioacchino, Andrea, Šulc, Petr, Komarova, Anastassia V, Greenbaum, Benjamin D, Monasson, Rémi, Cocco, Simona
Publicado 2021

A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity

por Bravi, Barbara, Di Gioacchino, Andrea, Fernandez-de-Cossio-Diaz, Jorge, Walczak, Aleksandra M, Mora, Thierry, Cocco, Simona, Monasson, Rémi
Publicado 2023

Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection

por Di Gioacchino, Andrea, Procyk, Jonah, Molari, Marco, Schreck, John S., Zhou, Yu, Liu, Yan, Monasson, Rémi, Cocco, Simona, Šulc, Petr
Publicado 2022

sgDI-tector: defective interfering viral genome bioinformatics for detection of coronavirus subgenomic RNAs

por Di Gioacchino, Andrea, Legendre, Rachel, Rahou, Yannis, Najburg, Valérie, Charneau, Pierre, Greenbaum, Benjamin D., Tangy, Frédéric, van der Werf, Sylvie, Cocco, Simona, Komarova, Anastassia V.
Publicado 2022