OmicsViz: Cytoscape plug-in for visualizing omics data across species

por Xia, Tian, Dickerson, Julie A.
Publicado 2008

Tissue-specific mouse mRNA isoform networks

por Kandoi, Gaurav, Dickerson, Julie A.
Publicado 2019

PathwayAccess: CellDesigner plugins for pathway databases

por Van Hemert, John L., Dickerson, Julie A.
Publicado 2010

OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data

por Xia, Tian, Hemert, John V., Dickerson, Julie A.
Publicado 2010

CytoModeler: a tool for bridging large-scale network analysis and dynamic quantitative modeling

por Xia, Tian, Van Hemert, John, Dickerson, Julie A.
Publicado 2011

Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities

por Fu, Yao, Jarboe, Laura R, Dickerson, Julie A
Publicado 2011

Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems

por Liu, Ruolin, Loraine, Ann E, Dickerson, Julie A
Publicado 2014

DiffSLC: A graph centrality method to detect essential proteins of a protein-protein interaction network

por Mistry, Divya, Wise, Roger P., Dickerson, Julie A.
Publicado 2017

A computational platform to maintain and migrate manual functional annotations for BioCyc databases

por Walsh, Jesse R, Sen, Taner Z, Dickerson, Julie A
Publicado 2014

Arabidopsis gene co-expression network and its functional modules

por Mao, Linyong, Van Hemert, John L, Dash, Sudhansu, Dickerson, Julie A
Publicado 2009

Network motif comparison rationalizes Sec1/Munc18-SNARE regulation mechanism in exocytosis

por Xia, Tian, Tong, Jiansong, Rathore, Shailendra S, Gu, Xun, Dickerson, Julie A
Publicado 2012

MetNetGE: interactive views of biological networks and ontologies

por Jia, Ming, Choi, Suh-Yeon, Reiners, Dirk, Wurtele, Eve S, Dickerson, Julie A
Publicado 2010

Plantmetabolomics.org: mass spectrometry-based Arabidopsis metabolomics—database and tools update

por Bais, Preeti, Moon-Quanbeck, Stephanie M., Nikolau, Basil J., Dickerson, Julie A.
Publicado 2012

PLEXdb: gene expression resources for plants and plant pathogens

por Dash, Sudhansu, Van Hemert, John, Hong, Lu, Wise, Roger P., Dickerson, Julie A.
Publicado 2012

VitisNet: “Omics” Integration through Grapevine Molecular Networks

por Grimplet, Jérôme, Cramer, Grant R., Dickerson, Julie A., Mathiason, Kathy, Van Hemert, John, Fennell, Anne Y.
Publicado 2009

The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize

por Walsh, Jesse R., Schaeffer, Mary L., Zhang, Peifen, Rhee, Seung Y., Dickerson, Julie A., Sen, Taner Z.
Publicado 2016

BarleyBase—an expression profiling database for plant genomics

por Shen, Lishuang, Gong, Jian, Caldo, Rico A., Nettleton, Dan, Cook, Dianne, Wise, Roger P., Dickerson, Julie A.
Publicado 2005

Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of “Unknown Function”

por Quanbeck, Stephanie M., Brachova, Libuse, Campbell, Alexis A., Guan, Xin, Perera, Ann, He, Kun, Rhee, Seung Y., Bais, Preeti, Dickerson, Julie A., Dixon, Philip, Wohlgemuth, Gert, Fiehn, Oliver, Barkan, Lenore, Lange, Iris, Lange, B. Markus, Lee, Insuk, Cortes, Diego, Salazar, Carolina, Shuman, Joel, Shulaev, Vladimir, Huhman, David V., Sumner, Lloyd W., Roth, Mary R., Welti, Ruth, Ilarslan, Hilal, Wurtele, Eve S., Nikolau, Basil J.
Publicado 2012