iterClust: a statistical framework for iterative clustering analysis

por Ding, Hongxu, Wang, Wanxin, Califano, Andrea
Publicado 2018

VEGA is an interpretable generative model for inferring biological network activity in single-cell transcriptomics

por Seninge, Lucas, Anastopoulos, Ioannis, Ding, Hongxu, Stuart, Joshua
Publicado 2021

Biological process activity transformation of single cell gene expression for cross-species alignment

por Ding, Hongxu, Blair, Andrew, Yang, Ying, Stuart, Joshua M.
Publicado 2019

Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures

por Ding, Hongxu, Anastopoulos, Ioannis, Bailey, Andrew D., Stuart, Joshua, Paten, Benedict
Publicado 2021

Development and validation of SSR markers related to flower color based on full-length transcriptome sequencing in Chrysanthemum

por Shi, Zhongya, Zhao, Wenqian, Li, Zhongai, Kang, Dongru, Ai, Penghui, Ding, Hongxu, Wang, Zicheng
Publicado 2022

Genetic and pharmacologic inhibition of ALDH1A3 as a treatment of β-cell failure

por Son, Jinsook, Du, Wen, Esposito, Mark, Shariati, Kaavian, Ding, Hongxu, Kang, Yibin, Accili, Domenico
Publicado 2023

Prioritizing transcriptional factors in gene regulatory networks with PageRank

por Ding, Hongxu, Yang, Ying, Xue, Yuanqing, Seninge, Lucas, Gong, Henry, Safavi, Rojin, Califano, Andrea, Stuart, Joshua M.
Publicado 2020

Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling

por Bailey, Andrew D, Talkish, Jason, Ding, Hongxu, Igel, Haller, Duran, Alejandra, Mantripragada, Shreya, Paten, Benedict, Ares, Manuel
Publicado 2022

Notch-mediated Ephrin signaling disrupts islet architecture and β cell function

por Bartolomé, Alberto, Suda, Nina, Yu, Junjie, Zhu, Changyu, Son, Jinsook, Ding, Hongxu, Califano, Andrea, Accili, Domenico, Pajvani, Utpal B.
Publicado 2022

Airway basal cells show regionally distinct potential to undergo metaplastic differentiation

por Zhou, Yizhuo, Yang, Ying, Guo, Lihao, Qian, Jun, Ge, Jian, Sinner, Debora, Ding, Hongxu, Califano, Andrea, Cardoso, Wellington V
Publicado 2022

Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm

por Ding, Hongxu, Douglass, Eugene F., Sonabend, Adam M., Mela, Angeliki, Bose, Sayantan, Gonzalez, Christian, Canoll, Peter D., Sims, Peter A., Alvarez, Mariano J., Califano, Andrea
Publicado 2018

E2F1 Mediates SOX17 Deficiency-Induced Pulmonary Hypertension

por Yi, Dan, Liu, Bin, Ding, Hongxu, Li, Shuai, Li, Rebecca, Pan, Jiakai, Ramirez, Karina, Xia, Xiaomei, Kala, Mrinalini, Singh, Indrapal, Ye, Qinmao, Lee, Won Hee, Frye, Richard E., Wang, Ting, Zhao, Yutong, Knox, Kenneth S., Glembotski, Christopher C., Fallon, Michael B., Dai, Zhiyu
Publicado 2023